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  5. Pp3c18_8920V3.1

Pp3c18_8920V3.1


Description : Lateral root primordium (LRP) protein-related


Gene families : OG0001199 (Archaeplastida) Phylogenetic Tree(s): OG0001199_tree ,
OG_05_0000755 (LandPlants) Phylogenetic Tree(s): OG_05_0000755_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c18_8920V3.1
Cluster HCCA: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
AT1G19790 SRS7 SHI-related sequence 7 0.02 Archaeplastida
AT4G36260 SRS2, STY2 Lateral root primordium (LRP) protein-related 0.03 Archaeplastida
GSVIVT01009812001 No alias RNA biosynthesis.transcriptional activation.SRS... 0.03 Archaeplastida
GSVIVT01024206001 No alias RNA biosynthesis.transcriptional activation.SRS... 0.02 Archaeplastida
GSVIVT01037267001 No alias RNA biosynthesis.transcriptional activation.SRS... 0.03 Archaeplastida
LOC_Os05g32070.1 No alias transcription factor (SRS) 0.02 Archaeplastida
LOC_Os08g43410.1 No alias transcription factor (SRS) 0.02 Archaeplastida
Mp3g19510.1 No alias transcription factor (SRS) 0.04 Archaeplastida
Zm00001e013256_P002 No alias transcription factor (SRS) 0.02 Archaeplastida
Zm00001e028304_P001 No alias transcription factor (SRS) 0.04 Archaeplastida
Zm00001e030189_P001 No alias transcription factor (SRS) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0010498 proteasomal protein catabolic process IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!