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  5. Pp3c19_12990V3.1

Pp3c19_12990V3.1


Description : DNA-directed RNA polymerase family protein


Gene families : OG0000707 (Archaeplastida) Phylogenetic Tree(s): OG0000707_tree ,
OG_05_0002942 (LandPlants) Phylogenetic Tree(s): OG_05_0002942_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c19_12990V3.1
Cluster HCCA: Cluster_236

Target Alias Description ECC score Gene Family Method Actions
ATCG00170 RPOC2 DNA-directed RNA polymerase family protein 0.03 Archaeplastida
ATCG00180 RPOC1 DNA-directed RNA polymerase family protein 0.03 Archaeplastida
Mp1g00060.1 No alias RpoC2 core component plastid-encoded RNA polymerase 0.02 Archaeplastida
Solyc00g500052.1.1 No alias RpoC1 core component plastid-encoded RNA polymerase.... 0.02 Archaeplastida
Solyc00g500135.1.1 No alias RpoC1 core component plastid-encoded RNA polymerase.... 0.02 Archaeplastida
Solyc00g500205.1.1 No alias RpoC1 core component plastid-encoded RNA polymerase.... 0.02 Archaeplastida
Solyc01g017370.2.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.03 Archaeplastida
Solyc01g017470.3.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.02 Archaeplastida
Solyc11g062110.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
CC GO:0030286 dynein complex IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!