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  5. Pp3c1_10040V3.1

Pp3c1_10040V3.1


Description : Ribosomal RNA processing Brix domain protein


Gene families : OG0005658 (Archaeplastida) Phylogenetic Tree(s): OG0005658_tree ,
OG_05_0006541 (LandPlants) Phylogenetic Tree(s): OG_05_0006541_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_10040V3.1
Cluster HCCA: Cluster_244

Target Alias Description ECC score Gene Family Method Actions
AT4G01560 MEE49 Ribosomal RNA processing Brix domain protein 0.13 Archaeplastida
Cpa|evm.model.tig00000405.29 No alias No description available 0.03 Archaeplastida
Cre04.g218850 No alias No description available 0.06 Archaeplastida
Gb_30986 No alias pre-60S ribosomal subunit assembly factor (RPF1) 0.05 Archaeplastida
LOC_Os06g04600.1 No alias pre-60S ribosomal subunit assembly factor (RPF1) 0.05 Archaeplastida
MA_10436733g0010 No alias pre-60S ribosomal subunit assembly factor (RPF1) 0.04 Archaeplastida
Mp4g09960.1 No alias pre-60S ribosomal subunit assembly factor (RPF1) 0.07 Archaeplastida
Solyc11g066280.3.1 No alias pre-60S ribosomal subunit assembly factor (RPF1) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!