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  5. Pp3c1_10180V3.1

Pp3c1_10180V3.1


Description : Pectin lyase-like superfamily protein


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0016252 (LandPlants) Phylogenetic Tree(s): OG_05_0016252_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_10180V3.1
Cluster HCCA: Cluster_285

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00189000 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.01 Archaeplastida
AT1G04680 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT1G67750 No alias Pectate lyase family protein 0.08 Archaeplastida
AT4G24780 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01003984001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
GSVIVT01024239001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
Gb_02248 No alias pectate lyase 0.03 Archaeplastida
LOC_Os02g12300.1 No alias pectate lyase 0.01 Archaeplastida
LOC_Os06g38510.2 No alias pectate lyase 0.01 Archaeplastida
MA_101171g0010 No alias pectate lyase 0.04 Archaeplastida
MA_10205415g0010 No alias pectate lyase 0.04 Archaeplastida
MA_10426822g0020 No alias pectate lyase 0.04 Archaeplastida
MA_1164682g0010 No alias pectate lyase 0.04 Archaeplastida
MA_170547g0010 No alias pectate lyase 0.08 Archaeplastida
MA_204440g0010 No alias Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... 0.01 Archaeplastida
MA_394910g0010 No alias Probable pectate lyase 22 OS=Arabidopsis thaliana... 0.08 Archaeplastida
MA_62112g0010 No alias pectate lyase 0.02 Archaeplastida
MA_66914g0010 No alias pectate lyase 0.02 Archaeplastida
MA_91467g0010 No alias pectate lyase 0.06 Archaeplastida
MA_91467g0020 No alias pectate lyase 0.05 Archaeplastida
MA_956526g0010 No alias pectate lyase 0.03 Archaeplastida
MA_97947g0010 No alias pectate lyase 0.05 Archaeplastida
Pp3c14_6710V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c21_16990V3.1 No alias Pectate lyase family protein 0.06 Archaeplastida
Pp3c22_19760V3.1 No alias Pectate lyase family protein 0.02 Archaeplastida
Pp3c22_19780V3.1 No alias Pectate lyase family protein 0.02 Archaeplastida
Solyc06g083580.4.1 No alias pectate lyase 0.03 Archaeplastida
Solyc09g061890.3.1 No alias pectate lyase 0.04 Archaeplastida
Zm00001e004654_P002 No alias pectate lyase 0.02 Archaeplastida
Zm00001e024959_P001 No alias pectate lyase 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!