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  5. AT4G24490

AT4G24490 (ATRGTA1, RGTA1)


Aliases : ATRGTA1, RGTA1

Description : RAB geranylgeranyl transferase alpha subunit 1


Gene families : OG0004459 (Archaeplastida) Phylogenetic Tree(s): OG0004459_tree ,
OG_05_0004651 (LandPlants) Phylogenetic Tree(s): OG_05_0004651_tree ,
OG_06_0006097 (SeedPlants) Phylogenetic Tree(s): OG_06_0006097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G24490
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
Cre07.g339350 No alias Vesicle trafficking.regulation of membrane tethering and... 0.02 Archaeplastida
GSVIVT01009190001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.03 Archaeplastida
GSVIVT01009191001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.05 Archaeplastida
LOC_Os06g46380.1 No alias subunit alpha of RAB-GTPase geranylgeranyltransferase... 0.02 Archaeplastida
Solyc04g076430.3.1 No alias subunit alpha of RAB-GTPase geranylgeranyltransferase... 0.07 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0046686 response to cadmium ion IEP Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
CC GO:0000502 proteasome complex IEP Neighborhood
BP GO:0000913 preprophase band assembly IEP Neighborhood
BP GO:0003006 developmental process involved in reproduction IEP Neighborhood
MF GO:0003691 double-stranded telomeric DNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0004619 phosphoglycerate mutase activity IEP Neighborhood
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Neighborhood
MF GO:0005484 SNAP receptor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005768 endosome IEP Neighborhood
CC GO:0005797 Golgi medial cisterna IEP Neighborhood
CC GO:0005801 cis-Golgi network IEP Neighborhood
CC GO:0005802 trans-Golgi network IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
CC GO:0005856 cytoskeleton IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
CC GO:0005938 cell cortex IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006006 glucose metabolic process IEP Neighborhood
BP GO:0006094 gluconeogenesis IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006446 regulation of translational initiation IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006482 protein demethylation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006626 protein targeting to mitochondrion IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007020 microtubule nucleation IEP Neighborhood
BP GO:0007021 tubulin complex assembly IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
BP GO:0007602 phototransduction IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
CC GO:0008180 COP9 signalosome IEP Neighborhood
BP GO:0008214 protein dealkylation IEP Neighborhood
CC GO:0008540 proteasome regulatory particle, base subcomplex IEP Neighborhood
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
CC GO:0009328 phenylalanine-tRNA ligase complex IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
CC GO:0009574 preprophase band IEP Neighborhood
BP GO:0009582 detection of abiotic stimulus IEP Neighborhood
BP GO:0009583 detection of light stimulus IEP Neighborhood
BP GO:0009585 red, far-red light phototransduction IEP Neighborhood
BP GO:0009626 plant-type hypersensitive response IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0009639 response to red or far red light IEP Neighborhood
BP GO:0009640 photomorphogenesis IEP Neighborhood
BP GO:0009756 carbohydrate mediated signaling IEP Neighborhood
BP GO:0009790 embryo development IEP Neighborhood
BP GO:0009791 post-embryonic development IEP Neighborhood
BP GO:0009793 embryo development ending in seed dormancy IEP Neighborhood
BP GO:0009816 defense response to bacterium, incompatible interaction IEP Neighborhood
BP GO:0009845 seed germination IEP Neighborhood
BP GO:0009853 photorespiration IEP Neighborhood
BP GO:0009909 regulation of flower development IEP Neighborhood
BP GO:0009933 meristem structural organization IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010017 red or far-red light signaling pathway IEP Neighborhood
BP GO:0010162 seed dormancy process IEP Neighborhood
BP GO:0010182 sugar mediated signaling pathway IEP Neighborhood
BP GO:0010216 maintenance of DNA methylation IEP Neighborhood
BP GO:0010498 proteasomal protein catabolic process IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
BP GO:0016577 histone demethylation IEP Neighborhood
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
BP GO:0019319 hexose biosynthetic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0019915 lipid storage IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0022611 dormancy process IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030126 COPI vesicle coat IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
MF GO:0030276 clathrin binding IEP Neighborhood
BP GO:0030422 production of siRNA involved in RNA interference IEP Neighborhood
CC GO:0030863 cortical cytoskeleton IEP Neighborhood
BP GO:0030865 cortical cytoskeleton organization IEP Neighborhood
CC GO:0030981 cortical microtubule cytoskeleton IEP Neighborhood
BP GO:0031050 dsRNA fragmentation IEP Neighborhood
BP GO:0031122 cytoplasmic microtubule organization IEP Neighborhood
CC GO:0031410 cytoplasmic vesicle IEP Neighborhood
BP GO:0031935 regulation of chromatin silencing IEP Neighborhood
CC GO:0031982 vesicle IEP Neighborhood
CC GO:0031985 Golgi cisterna IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
MF GO:0032451 demethylase activity IEP Neighborhood
MF GO:0032452 histone demethylase activity IEP Neighborhood
MF GO:0032453 histone demethylase activity (H3-K4 specific) IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034050 host programmed cell death induced by symbiont IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0034720 histone H3-K4 demethylation IEP Neighborhood
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP Neighborhood
BP GO:0035966 response to topologically incorrect protein IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0042162 telomeric DNA binding IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043047 single-stranded telomeric DNA binding IEP Neighborhood
BP GO:0043094 cellular metabolic compound salvage IEP Neighborhood
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043622 cortical microtubule organization IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0043687 post-translational protein modification IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0045298 tubulin complex IEP Neighborhood
BP GO:0046364 monosaccharide biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity IEP Neighborhood
BP GO:0048532 anatomical structure arrangement IEP Neighborhood
BP GO:0048580 regulation of post-embryonic development IEP Neighborhood
BP GO:0048609 multicellular organismal reproductive process IEP Neighborhood
BP GO:0048831 regulation of shoot system development IEP Neighborhood
BP GO:0050793 regulation of developmental process IEP Neighborhood
BP GO:0050826 response to freezing IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051239 regulation of multicellular organismal process IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0051788 response to misfolded protein IEP Neighborhood
BP GO:0060968 regulation of gene silencing IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0070076 histone lysine demethylation IEP Neighborhood
BP GO:0070585 protein localization to mitochondrion IEP Neighborhood
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP Neighborhood
BP GO:0070988 demethylation IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072655 establishment of protein localization to mitochondrion IEP Neighborhood
BP GO:0080129 proteasome core complex assembly IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0097708 intracellular vesicle IEP Neighborhood
CC GO:0098791 Golgi subcompartment IEP Neighborhood
MF GO:0098847 sequence-specific single stranded DNA binding IEP Neighborhood
CC GO:0099568 cytoplasmic region IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
BP GO:1902275 regulation of chromatin organization IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
CC GO:1905369 endopeptidase complex IEP Neighborhood
BP GO:2000026 regulation of multicellular organismal development IEP Neighborhood
BP GO:2000241 regulation of reproductive process IEP Neighborhood
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 582 593
IPR002088 Prenyl_trans_a 125 151
IPR002088 Prenyl_trans_a 45 70
IPR002088 Prenyl_trans_a 160 186
IPR002088 Prenyl_trans_a 205 232
IPR002088 Prenyl_trans_a 90 117
No external refs found!