AT4G24580 (REN1)

Aliases : REN1

Description : Rho GTPase activation protein (RhoGAP) with PH domain

Gene families : OG0001921 (Archaeplastida) Phylogenetic Tree(s): OG0001921_tree ,
OG_05_0001364 (LandPlants) Phylogenetic Tree(s): OG_05_0001364_tree ,
OG_06_0000985 (SeedPlants) Phylogenetic Tree(s): OG_06_0000985_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G24580
Cluster	HCCA: Cluster_96

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01009150001	No alias	Rho GTPase-activating protein 7 OS=Arabidopsis thaliana	0.05	Archaeplastida
GSVIVT01009151001	No alias	Rho GTPase-activating protein REN1 OS=Arabidopsis thaliana	0.04	Archaeplastida
LOC_Os03g11140.1	No alias	Rho GTPase-activating protein 7 OS=Arabidopsis thaliana...	0.07	Archaeplastida
LOC_Os03g24180.1	No alias	Rho GTPase-activating protein 7 OS=Arabidopsis thaliana...	0.04	Archaeplastida
MA_42703g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e001096_P001	No alias	Rho GTPase-activating protein REN1 OS=Arabidopsis...	0.02	Archaeplastida
Zm00001e036715_P004	No alias	Rho GTPase-activating protein REN1 OS=Arabidopsis...	0.08	Archaeplastida
Zm00001e038550_P002	No alias	Rho GTPase-activating protein REN1 OS=Arabidopsis...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005543	phospholipid binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	None	Extended
CC	GO:0005938	cell cortex	IDA	Interproscan
BP	GO:0007155	cell adhesion	None	Extended
BP	GO:0007165	signal transduction	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008289	lipid binding	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009827	plant-type cell wall modification	RCA	Interproscan
BP	GO:0009846	pollen germination	IMP	Interproscan
BP	GO:0009860	pollen tube growth	RCA	Interproscan
BP	GO:0009865	pollen tube adhesion	IMP	Interproscan
BP	GO:0009932	cell tip growth	None	Extended
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009968	negative regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010648	negative regulation of cell communication	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
MF	GO:0017016	Ras GTPase binding	None	Extended
MF	GO:0017048	Rho GTPase binding	IPI	Interproscan
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022610	biological adhesion	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023057	negative regulation of signaling	None	Extended
CC	GO:0030133	transport vesicle	None	Extended
MF	GO:0031267	small GTPase binding	None	Extended
CC	GO:0031410	cytoplasmic vesicle	None	Extended
CC	GO:0031982	vesicle	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032989	cellular component morphogenesis	None	Extended
BP	GO:0035023	regulation of Rho protein signal transduction	None	Extended
BP	GO:0035024	negative regulation of Rho protein signal transduction	IMP	Interproscan
MF	GO:0035091	phosphatidylinositol binding	ISS	Interproscan
BP	GO:0040007	growth	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
CC	GO:0042995	cell projection	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0044703	multi-organism reproductive process	None	Extended
CC	GO:0045177	apical part of cell	IDA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0046578	regulation of Ras protein signal transduction	None	Extended
BP	GO:0046580	negative regulation of Ras protein signal transduction	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048868	pollen tube development	IMP	Interproscan
BP	GO:0048868	pollen tube development	RCA	Interproscan
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
MF	GO:0051020	GTPase binding	None	Extended
BP	GO:0051056	regulation of small GTPase mediated signal transduction	None	Extended
BP	GO:0051058	negative regulation of small GTPase mediated signal transduction	None	Extended
BP	GO:0051704	multi-organism process	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070382	exocytic vesicle	IDA	Interproscan
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0090406	pollen tube	IDA	Interproscan
CC	GO:0097708	intracellular vesicle	None	Extended
BP	GO:0098609	cell-cell adhesion	None	Extended
BP	GO:0098740	multi organism cell adhesion	None	Extended
CC	GO:0099503	secretory vesicle	None	Extended
CC	GO:0099568	cytoplasmic region	None	Extended
CC	GO:0120025	plasma membrane bounded cell projection	None	Extended
BP	GO:1902531	regulation of intracellular signal transduction	None	Extended
BP	GO:1902532	negative regulation of intracellular signal transduction	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	Neighborhood
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Neighborhood
BP	GO:0001558	regulation of cell growth	IEP	Neighborhood
BP	GO:0002790	peptide secretion	IEP	Neighborhood
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004564	beta-fructofuranosidase activity	IEP	Neighborhood
MF	GO:0004650	polygalacturonase activity	IEP	Neighborhood
MF	GO:0005200	structural constituent of cytoskeleton	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
MF	GO:0005216	ion channel activity	IEP	Neighborhood
MF	GO:0005516	calmodulin binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005856	cytoskeleton	IEP	Neighborhood
CC	GO:0005884	actin filament	IEP	Neighborhood
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Neighborhood
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Neighborhood
BP	GO:0006874	cellular calcium ion homeostasis	IEP	Neighborhood
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	Neighborhood
BP	GO:0007010	cytoskeleton organization	IEP	Neighborhood
BP	GO:0007164	establishment of tissue polarity	IEP	Neighborhood
BP	GO:0007204	positive regulation of cytosolic calcium ion concentration	IEP	Neighborhood
MF	GO:0008536	Ran GTPase binding	IEP	Neighborhood
BP	GO:0009306	protein secretion	IEP	Neighborhood
BP	GO:0010191	mucilage metabolic process	IEP	Neighborhood
BP	GO:0010192	mucilage biosynthetic process	IEP	Neighborhood
BP	GO:0010208	pollen wall assembly	IEP	Neighborhood
BP	GO:0010214	seed coat development	IEP	Neighborhood
BP	GO:0010584	pollen exine formation	IEP	Neighborhood
BP	GO:0010769	regulation of cell morphogenesis involved in differentiation	IEP	Neighborhood
BP	GO:0010927	cellular component assembly involved in morphogenesis	IEP	Neighborhood
MF	GO:0015267	channel activity	IEP	Neighborhood
MF	GO:0016175	superoxide-generating NADPH oxidase activity	IEP	Neighborhood
MF	GO:0016307	phosphatidylinositol phosphate kinase activity	IEP	Neighborhood
MF	GO:0016308	1-phosphatidylinositol-4-phosphate 5-kinase activity	IEP	Neighborhood
CC	GO:0016324	apical plasma membrane	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
BP	GO:0017157	regulation of exocytosis	IEP	Neighborhood
BP	GO:0022406	membrane docking	IEP	Neighborhood
BP	GO:0022603	regulation of anatomical structure morphogenesis	IEP	Neighborhood
BP	GO:0022604	regulation of cell morphogenesis	IEP	Neighborhood
MF	GO:0022803	passive transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022838	substrate-specific channel activity	IEP	Neighborhood
MF	GO:0030551	cyclic nucleotide binding	IEP	Neighborhood
MF	GO:0030599	pectinesterase activity	IEP	Neighborhood
BP	GO:0030834	regulation of actin filament depolymerization	IEP	Neighborhood
BP	GO:0032940	secretion by cell	IEP	Neighborhood
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEP	Neighborhood
BP	GO:0043244	regulation of protein complex disassembly	IEP	Neighborhood
MF	GO:0043492	ATPase activity, coupled to movement of substances	IEP	Neighborhood
BP	GO:0046903	secretion	IEP	Neighborhood
BP	GO:0048278	vesicle docking	IEP	Neighborhood
BP	GO:0048354	mucilage biosynthetic process involved in seed coat development	IEP	Neighborhood
BP	GO:0048359	mucilage metabolic process involved in seed coat development	IEP	Neighborhood
MF	GO:0050664	oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor	IEP	Neighborhood
BP	GO:0050848	regulation of calcium-mediated signaling	IEP	Neighborhood
BP	GO:0050850	positive regulation of calcium-mediated signaling	IEP	Neighborhood
BP	GO:0051046	regulation of secretion	IEP	Neighborhood
BP	GO:0051128	regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051480	regulation of cytosolic calcium ion concentration	IEP	Neighborhood
BP	GO:0051510	regulation of unidimensional cell growth	IEP	Neighborhood
BP	GO:0051640	organelle localization	IEP	Neighborhood
BP	GO:0051648	vesicle localization	IEP	Neighborhood
BP	GO:0051650	establishment of vesicle localization	IEP	Neighborhood
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Neighborhood
BP	GO:0060284	regulation of cell development	IEP	Neighborhood
BP	GO:0060627	regulation of vesicle-mediated transport	IEP	Neighborhood
BP	GO:0080092	regulation of pollen tube growth	IEP	Neighborhood
CC	GO:0098590	plasma membrane region	IEP	Neighborhood
BP	GO:0140029	exocytic process	IEP	Neighborhood
BP	GO:0140056	organelle localization by membrane tethering	IEP	Neighborhood
BP	GO:1901879	regulation of protein depolymerization	IEP	Neighborhood
BP	GO:1902533	positive regulation of intracellular signal transduction	IEP	Neighborhood
BP	GO:1903530	regulation of secretion by cell	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000198	RhoGAP_dom	222	365
IPR025757	MIP1_Leuzipper	659	733
IPR001849	PH_domain	62	166

External Links

No external refs found!

AT4G24580 (REN1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation