Pp3c1_22900V3.1

Description : clone eighty-four

Gene families : OG0001187 (Archaeplastida) Phylogenetic Tree(s): OG0001187_tree ,
OG_05_0004019 (LandPlants) Phylogenetic Tree(s): OG_05_0004019_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c1_22900V3.1
Cluster	HCCA: Cluster_27

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00061p00084390	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.02	Archaeplastida
AMTR_s00071p00045940	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.04	Archaeplastida
AT3G07100	ERMO2, SEC24A	Sec23/Sec24 protein transport family protein	0.05	Archaeplastida
AT3G44340	CEF	clone eighty-four	0.02	Archaeplastida
Cpa\|evm.model.tig00000829.3	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.02	Archaeplastida
Cre02.g091150	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.03	Archaeplastida
GSVIVT01014261001	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.05	Archaeplastida
GSVIVT01014611001	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.06	Archaeplastida
Gb_11357	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.03	Archaeplastida
Gb_26869	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.02	Archaeplastida
Gb_38621	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.05	Archaeplastida
LOC_Os04g04020.1	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.07	Archaeplastida
LOC_Os12g24250.1	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.04	Archaeplastida
MA_10430919g0010	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.03	Archaeplastida
MA_10434705g0010	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.02	Archaeplastida
MA_45050g0010	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.04	Archaeplastida
MA_923164g0010	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.03	Archaeplastida
Mp7g13350.1	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.06	Archaeplastida
Mp7g13560.1	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.07	Archaeplastida
Smo140536	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.04	Archaeplastida
Smo157789	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.02	Archaeplastida
Solyc02g082220.3.1	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.06	Archaeplastida
Solyc06g084210.3.1	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.06	Archaeplastida
Zm00001e008766_P001	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.08	Archaeplastida
Zm00001e021459_P002	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.03	Archaeplastida
Zm00001e040573_P001	No alias	component Sec24 of Sec23/24 cargo adaptor subcomplex	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0006888	ER to Golgi vesicle-mediated transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030127	COPII vesicle coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0042886	amide transport	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044433	cytoplasmic vesicle part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0030126	COPI vesicle coat	IEP	Neighborhood
CC	GO:0044431	Golgi apparatus part	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR012990	Sec23_24_beta_S	607	690
IPR006896	Sec23/24_trunk_dom	366	601
IPR006895	Znf_Sec23_Sec24	289	329
IPR006900	Sec23/24_helical_dom	702	799

External Links

No external refs found!

Pp3c1_22900V3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation