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  5. Pp3c1_24950V3.1

Pp3c1_24950V3.1


Description : dicer-like 1


Gene families : OG0000221 (Archaeplastida) Phylogenetic Tree(s): OG0000221_tree ,
OG_05_0004811 (LandPlants) Phylogenetic Tree(s): OG_05_0004811_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_24950V3.1
Cluster HCCA: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00127000 evm_27.TU.AmTr_v1... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 Archaeplastida
AT1G01040 DCL1, CAF,... dicer-like 1 0.02 Archaeplastida
AT5G20320 DCL4, ATDCL4 dicer-like 4 0.02 Archaeplastida
Gb_34257 No alias Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp.... 0.04 Archaeplastida
LOC_Os01g68120.1 No alias endoribonuclease (DCL3) 0.03 Archaeplastida
LOC_Os03g02970.1 No alias endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.02 Archaeplastida
MA_10437243g0010 No alias endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.02 Archaeplastida
MA_10437243g0020 No alias Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_108060g0010 No alias Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp.... 0.02 Archaeplastida
MA_9225368g0010 No alias No annotation 0.03 Archaeplastida
Smo74321 No alias RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 Archaeplastida
Solyc06g048960.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc10g005125.1.1 No alias Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana... 0.08 Archaeplastida
Zm00001e000158_P001 No alias endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.03 Archaeplastida
Zm00001e018890_P004 No alias endoribonuclease (DCL3) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
InterPro domains Description Start Stop
IPR005034 Dicer_dimerisation_dom 628 717
IPR001650 Helicase_C 501 553
No external refs found!