AT4G25270

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0010965 (SeedPlants) Phylogenetic Tree(s): OG_06_0010965_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G25270
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00246970	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g39530...	0.03	Archaeplastida
AMTR_s00092p00078040	No alias	Pentatricopeptide repeat-containing protein At4g35130,...	0.03	Archaeplastida
AMTR_s00099p00097640	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g39530...	0.03	Archaeplastida
AMTR_s00439p00011030	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At5g04780,...	0.03	Archaeplastida
GSVIVT01005577001	No alias	RNA processing.organelle machineries.RNA...	0.02	Archaeplastida
GSVIVT01027001001	No alias	Protein modification.phosphorylation.TKL kinase...	0.03	Archaeplastida
GSVIVT01027504001	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.02	Archaeplastida
LOC_Os02g09800.1	No alias	Pentatricopeptide repeat-containing protein At1g08070,...	0.02	Archaeplastida
LOC_Os04g49520.1	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
LOC_Os07g25500.1	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.03	Archaeplastida
Smo428483	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000103	sulfate assimilation	IEP	Neighborhood
BP	GO:0000160	phosphorelay signal transduction system	IEP	Neighborhood
BP	GO:0000165	MAPK cascade	IEP	Neighborhood
MF	GO:0000257	nitrilase activity	IEP	Neighborhood
BP	GO:0000302	response to reactive oxygen species	IEP	Neighborhood
BP	GO:0001101	response to acid chemical	IEP	Neighborhood
BP	GO:0002679	respiratory burst involved in defense response	IEP	Neighborhood
BP	GO:0002682	regulation of immune system process	IEP	Neighborhood
MF	GO:0003933	GTP cyclohydrolase activity	IEP	Neighborhood
MF	GO:0003935	GTP cyclohydrolase II activity	IEP	Neighborhood
MF	GO:0004604	phosphoadenylyl-sulfate reductase (thioredoxin) activity	IEP	Neighborhood
MF	GO:0004867	serine-type endopeptidase inhibitor activity	IEP	Neighborhood
MF	GO:0005275	amine transmembrane transporter activity	IEP	Neighborhood
CC	GO:0005652	nuclear lamina	IEP	Neighborhood
CC	GO:0005851	eukaryotic translation initiation factor 2B complex	IEP	Neighborhood
BP	GO:0006446	regulation of translational initiation	IEP	Neighborhood
BP	GO:0006605	protein targeting	IEP	Neighborhood
BP	GO:0006612	protein targeting to membrane	IEP	Neighborhood
BP	GO:0006638	neutral lipid metabolic process	IEP	Neighborhood
BP	GO:0006639	acylglycerol metabolic process	IEP	Neighborhood
BP	GO:0006641	triglyceride metabolic process	IEP	Neighborhood
BP	GO:0006771	riboflavin metabolic process	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006820	anion transport	IEP	Neighborhood
BP	GO:0006865	amino acid transport	IEP	Neighborhood
BP	GO:0006886	intracellular protein transport	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006952	defense response	IEP	Neighborhood
BP	GO:0006972	hyperosmotic response	IEP	Neighborhood
BP	GO:0007165	signal transduction	IEP	Neighborhood
BP	GO:0007275	multicellular organism development	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
MF	GO:0008422	beta-glucosidase activity	IEP	Neighborhood
MF	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	IEP	Neighborhood
BP	GO:0009231	riboflavin biosynthetic process	IEP	Neighborhood
BP	GO:0009414	response to water deprivation	IEP	Neighborhood
BP	GO:0009415	response to water	IEP	Neighborhood
BP	GO:0009617	response to bacterium	IEP	Neighborhood
BP	GO:0009695	jasmonic acid biosynthetic process	IEP	Neighborhood
BP	GO:0009719	response to endogenous stimulus	IEP	Neighborhood
BP	GO:0009723	response to ethylene	IEP	Neighborhood
BP	GO:0009725	response to hormone	IEP	Neighborhood
BP	GO:0009737	response to abscisic acid	IEP	Neighborhood
BP	GO:0009738	abscisic acid-activated signaling pathway	IEP	Neighborhood
BP	GO:0009753	response to jasmonic acid	IEP	Neighborhood
BP	GO:0009755	hormone-mediated signaling pathway	IEP	Neighborhood
BP	GO:0009798	axis specification	IEP	Neighborhood
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009863	salicylic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009864	induced systemic resistance, jasmonic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009867	jasmonic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009873	ethylene-activated signaling pathway	IEP	Neighborhood
MF	GO:0009931	calcium-dependent protein serine/threonine kinase activity	IEP	Neighborhood
BP	GO:0009943	adaxial/abaxial axis specification	IEP	Neighborhood
BP	GO:0009970	cellular response to sulfate starvation	IEP	Neighborhood
MF	GO:0009973	adenylyl-sulfate reductase activity	IEP	Neighborhood
BP	GO:0010035	response to inorganic substance	IEP	Neighborhood
BP	GO:0010052	guard cell differentiation	IEP	Neighborhood
BP	GO:0010071	root meristem specification	IEP	Neighborhood
BP	GO:0010078	maintenance of root meristem identity	IEP	Neighborhood
BP	GO:0010103	stomatal complex morphogenesis	IEP	Neighborhood
BP	GO:0010119	regulation of stomatal movement	IEP	Neighborhood
MF	GO:0010178	IAA-amino acid conjugate hydrolase activity	IEP	Neighborhood
MF	GO:0010179	IAA-Ala conjugate hydrolase activity	IEP	Neighborhood
BP	GO:0010200	response to chitin	IEP	Neighborhood
BP	GO:0010243	response to organonitrogen compound	IEP	Neighborhood
BP	GO:0010286	heat acclimation	IEP	Neighborhood
BP	GO:0010358	leaf shaping	IEP	Neighborhood
BP	GO:0010363	regulation of plant-type hypersensitive response	IEP	Neighborhood
BP	GO:0010492	maintenance of shoot apical meristem identity	IEP	Neighborhood
MF	GO:0010857	calcium-dependent protein kinase activity	IEP	Neighborhood
BP	GO:0010941	regulation of cell death	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
MF	GO:0015440	peptide-transporting ATPase activity	IEP	Neighborhood
MF	GO:0015462	ATPase-coupled protein transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015711	organic anion transport	IEP	Neighborhood
BP	GO:0015804	neutral amino acid transport	IEP	Neighborhood
BP	GO:0015824	proline transport	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
BP	GO:0015849	organic acid transport	IEP	Neighborhood
BP	GO:0016032	viral process	IEP	Neighborhood
BP	GO:0016145	S-glycoside catabolic process	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Neighborhood
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Neighborhood
MF	GO:0016815	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles	IEP	Neighborhood
CC	GO:0017119	Golgi transport complex	IEP	Neighborhood
MF	GO:0018822	nitrile hydratase activity	IEP	Neighborhood
MF	GO:0019137	thioglucosidase activity	IEP	Neighborhood
MF	GO:0019238	cyclohydrolase activity	IEP	Neighborhood
BP	GO:0019379	sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	IEP	Neighborhood
BP	GO:0019419	sulfate reduction	IEP	Neighborhood
BP	GO:0019432	triglyceride biosynthetic process	IEP	Neighborhood
BP	GO:0019499	cyanide metabolic process	IEP	Neighborhood
BP	GO:0019759	glycosinolate catabolic process	IEP	Neighborhood
BP	GO:0019762	glucosinolate catabolic process	IEP	Neighborhood
CC	GO:0019866	organelle inner membrane	IEP	Neighborhood
BP	GO:0023014	signal transduction by protein phosphorylation	IEP	Neighborhood
CC	GO:0030863	cortical cytoskeleton	IEP	Neighborhood
BP	GO:0031347	regulation of defense response	IEP	Neighborhood
BP	GO:0031348	negative regulation of defense response	IEP	Neighborhood
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
MF	GO:0033220	amide-transporting ATPase activity	IEP	Neighborhood
BP	GO:0033993	response to lipid	IEP	Neighborhood
CC	GO:0034399	nuclear periphery	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
BP	GO:0035303	regulation of dephosphorylation	IEP	Neighborhood
BP	GO:0035304	regulation of protein dephosphorylation	IEP	Neighborhood
BP	GO:0035556	intracellular signal transduction	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
BP	GO:0042445	hormone metabolic process	IEP	Neighborhood
BP	GO:0042493	response to drug	IEP	Neighborhood
BP	GO:0042538	hyperosmotic salinity response	IEP	Neighborhood
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0042762	regulation of sulfur metabolic process	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
BP	GO:0043067	regulation of programmed cell death	IEP	Neighborhood
BP	GO:0043433	negative regulation of DNA-binding transcription factor activity	IEP	Neighborhood
BP	GO:0044000	movement in host	IEP	Neighborhood
MF	GO:0044183	protein binding involved in protein folding	IEP	Neighborhood
BP	GO:0044403	symbiont process	IEP	Neighborhood
BP	GO:0044766	multi-organism transport	IEP	Neighborhood
BP	GO:0045088	regulation of innate immune response	IEP	Neighborhood
BP	GO:0045184	establishment of protein localization	IEP	Neighborhood
BP	GO:0045597	positive regulation of cell differentiation	IEP	Neighborhood
BP	GO:0045730	respiratory burst	IEP	Neighborhood
BP	GO:0046460	neutral lipid biosynthetic process	IEP	Neighborhood
BP	GO:0046463	acylglycerol biosynthetic process	IEP	Neighborhood
BP	GO:0046739	transport of virus in multicellular host	IEP	Neighborhood
BP	GO:0046740	transport of virus in host, cell to cell	IEP	Neighborhood
BP	GO:0046794	transport of virus	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
BP	GO:0046942	carboxylic acid transport	IEP	Neighborhood
MF	GO:0047427	cyanoalanine nitrilase activity	IEP	Neighborhood
MF	GO:0047558	3-cyanoalanine hydratase activity	IEP	Neighborhood
BP	GO:0048519	negative regulation of biological process	IEP	Neighborhood
BP	GO:0048532	anatomical structure arrangement	IEP	Neighborhood
BP	GO:0048583	regulation of response to stimulus	IEP	Neighborhood
BP	GO:0048585	negative regulation of response to stimulus	IEP	Neighborhood
BP	GO:0050776	regulation of immune response	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
BP	GO:0051026	chiasma assembly	IEP	Neighborhood
BP	GO:0051090	regulation of DNA-binding transcription factor activity	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0051246	regulation of protein metabolic process	IEP	Neighborhood
BP	GO:0051410	detoxification of nitrogen compound	IEP	Neighborhood
BP	GO:0051704	multi-organism process	IEP	Neighborhood
BP	GO:0051782	negative regulation of cell division	IEP	Neighborhood
BP	GO:0051814	movement in other organism involved in symbiotic interaction	IEP	Neighborhood
BP	GO:0052126	movement in host environment	IEP	Neighborhood
BP	GO:0052192	movement in environment of other organism involved in symbiotic interaction	IEP	Neighborhood
BP	GO:0061077	chaperone-mediated protein folding	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
BP	GO:0071702	organic substance transport	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
BP	GO:0072657	protein localization to membrane	IEP	Neighborhood
BP	GO:0080022	primary root development	IEP	Neighborhood
MF	GO:0080061	indole-3-acetonitrile nitrilase activity	IEP	Neighborhood
BP	GO:0080134	regulation of response to stress	IEP	Neighborhood
BP	GO:0080135	regulation of cellular response to stress	IEP	Neighborhood
BP	GO:0080167	response to karrikin	IEP	Neighborhood
BP	GO:0090150	establishment of protein localization to membrane	IEP	Neighborhood
BP	GO:0090626	plant epidermis morphogenesis	IEP	Neighborhood
BP	GO:0097305	response to alcohol	IEP	Neighborhood
BP	GO:1901698	response to nitrogen compound	IEP	Neighborhood
BP	GO:1901700	response to oxygen-containing compound	IEP	Neighborhood
BP	GO:1902456	regulation of stomatal opening	IEP	Neighborhood
BP	GO:1902579	multi-organism localization	IEP	Neighborhood
BP	GO:1902586	multi-organism intercellular transport	IEP	Neighborhood
BP	GO:2000377	regulation of reactive oxygen species metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	379	438
IPR002885	Pentatricopeptide_repeat	161	205
IPR002885	Pentatricopeptide_repeat	259	303
IPR002885	Pentatricopeptide_repeat	233	256
IPR002885	Pentatricopeptide_repeat	332	357
IPR002885	Pentatricopeptide_repeat	133	156
IPR002885	Pentatricopeptide_repeat	500	525

External Links

No external refs found!

AT4G25270

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation