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  5. Pp3c1_35100V3.1

Pp3c1_35100V3.1


Description : Pectin lyase-like superfamily protein


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0023112 (LandPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_35100V3.1
Cluster HCCA: Cluster_206

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00123190 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
AMTR_s00039p00186640 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
AT2G02720 No alias Pectate lyase family protein 0.03 Archaeplastida
AT3G01270 No alias Pectate lyase family protein 0.03 Archaeplastida
AT3G07010 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT3G24670 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT3G27400 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT4G13210 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT4G24780 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT5G15110 No alias Pectate lyase family protein 0.03 Archaeplastida
GSVIVT01000592001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
GSVIVT01008053001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
GSVIVT01011348001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
GSVIVT01016209001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.01 Archaeplastida
GSVIVT01020067001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
GSVIVT01020068001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.06 Archaeplastida
GSVIVT01029048001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
Gb_02248 No alias pectate lyase 0.02 Archaeplastida
Gb_19802 No alias pectate lyase 0.03 Archaeplastida
LOC_Os02g12300.1 No alias pectate lyase 0.05 Archaeplastida
LOC_Os04g05050.1 No alias pectate lyase 0.02 Archaeplastida
LOC_Os06g05209.1 No alias pectate lyase 0.03 Archaeplastida
LOC_Os06g38510.2 No alias pectate lyase 0.03 Archaeplastida
MA_101171g0010 No alias pectate lyase 0.02 Archaeplastida
MA_10426822g0020 No alias pectate lyase 0.02 Archaeplastida
MA_203992g0010 No alias pectate lyase 0.03 Archaeplastida
MA_66914g0010 No alias pectate lyase 0.06 Archaeplastida
MA_91467g0020 No alias pectate lyase 0.02 Archaeplastida
MA_97947g0010 No alias pectate lyase 0.02 Archaeplastida
Mp8g00770.1 No alias pectate lyase 0.04 Archaeplastida
Mp8g10190.1 No alias pectate lyase 0.05 Archaeplastida
Pp3c10_20140V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Pp3c13_1640V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c14_6710V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Pp3c17_16370V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c1_33130V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c22_19760V3.1 No alias Pectate lyase family protein 0.04 Archaeplastida
Pp3c22_19780V3.1 No alias Pectate lyase family protein 0.04 Archaeplastida
Pp3c3_35190V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
Solyc01g010740.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc02g087670.3.1 No alias pectate lyase 0.02 Archaeplastida
Solyc03g058890.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc03g058910.3.1 No alias pectate lyase 0.03 Archaeplastida
Solyc03g113150.3.1 No alias pectate lyase 0.02 Archaeplastida
Solyc05g007080.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc05g014000.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc06g071840.3.1 No alias Probable pectate lyase 22 OS=Arabidopsis thaliana... 0.01 Archaeplastida
Solyc06g083580.4.1 No alias pectate lyase 0.04 Archaeplastida
Solyc09g008380.3.1 No alias pectate lyase 0.02 Archaeplastida
Zm00001e024959_P001 No alias pectate lyase 0.03 Archaeplastida
Zm00001e037311_P001 No alias pectate lyase 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
MF GO:0005381 iron ion transmembrane transporter activity IEP Neighborhood
CC GO:0005887 integral component of plasma membrane IEP Neighborhood
BP GO:0006826 iron ion transport IEP Neighborhood
CC GO:0031226 intrinsic component of plasma membrane IEP Neighborhood
CC GO:0033573 high-affinity iron permease complex IEP Neighborhood
BP GO:0034755 iron ion transmembrane transport IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
CC GO:1902495 transmembrane transporter complex IEP Neighborhood
CC GO:1905862 ferroxidase complex IEP Neighborhood
CC GO:1990351 transporter complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!