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Description : RNApolymerase sigma subunit 2
Gene families : OG0000365 (Archaeplastida) Phylogenetic Tree(s): OG0000365_tree ,
OG_05_0001853 (LandPlants) Phylogenetic Tree(s): OG_05_0001853_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Pp3c1_36580V3.1 | |
| Cluster | HCCA: Cluster_160 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00009p00072720 | evm_27.TU.AmTr_v1... | RNA biosynthesis.organelle... | 0.08 | Archaeplastida | |
| AMTR_s00011p00258380 | evm_27.TU.AmTr_v1... | RNA biosynthesis.organelle... | 0.09 | Archaeplastida | |
| AMTR_s00011p00266100 | evm_27.TU.AmTr_v1... | RNA biosynthesis.organelle... | 0.03 | Archaeplastida | |
| AMTR_s00025p00248060 | evm_27.TU.AmTr_v1... | RNA biosynthesis.organelle... | 0.02 | Archaeplastida | |
| AT1G08540 | ATSIG1, SIGB,... | RNApolymerase sigma subunit 2 | 0.08 | Archaeplastida | |
| AT2G36990 | SIGF, SIG6,... | RNApolymerase sigma-subunit F | 0.07 | Archaeplastida | |
| AT5G13730 | SIGD, SIG4 | sigma factor 4 | 0.04 | Archaeplastida | |
| Cpa|evm.model.tig00000842.1 | No alias | RNA biosynthesis.organelle... | 0.01 | Archaeplastida | |
| GSVIVT01019326001 | No alias | RNA biosynthesis.organelle... | 0.06 | Archaeplastida | |
| GSVIVT01025717001 | No alias | RNA biosynthesis.organelle... | 0.05 | Archaeplastida | |
| GSVIVT01032193001 | No alias | RNA biosynthesis.organelle... | 0.03 | Archaeplastida | |
| Gb_05479 | No alias | basal transcription factor (Sigma) | 0.07 | Archaeplastida | |
| Gb_05480 | No alias | no hits & (original description: none) | 0.06 | Archaeplastida | |
| Gb_37602 | No alias | basal transcription factor (Sigma) | 0.02 | Archaeplastida | |
| LOC_Os03g16430.1 | No alias | basal transcription factor (Sigma) | 0.05 | Archaeplastida | |
| LOC_Os05g51150.1 | No alias | basal transcription factor (Sigma) | 0.02 | Archaeplastida | |
| LOC_Os08g14450.1 | No alias | basal transcription factor (Sigma) | 0.02 | Archaeplastida | |
| LOC_Os11g26160.1 | No alias | basal transcription factor (Sigma) | 0.06 | Archaeplastida | |
| MA_10429585g0010 | No alias | basal transcription factor (Sigma) | 0.06 | Archaeplastida | |
| Mp4g13380.1 | No alias | basal transcription factor (Sigma) | 0.04 | Archaeplastida | |
| Smo117159 | No alias | RNA biosynthesis.organelle... | 0.05 | Archaeplastida | |
| Smo266972 | No alias | RNA biosynthesis.organelle... | 0.02 | Archaeplastida | |
| Solyc01g081490.3.1 | No alias | basal transcription factor (Sigma) | 0.07 | Archaeplastida | |
| Solyc03g097320.3.1 | No alias | basal transcription factor (Sigma) | 0.02 | Archaeplastida | |
| Solyc08g065970.3.1 | No alias | basal transcription factor (Sigma) | 0.03 | Archaeplastida | |
| Solyc09g008040.3.1 | No alias | basal transcription factor (Sigma) | 0.06 | Archaeplastida | |
| Zm00001e001198_P005 | No alias | basal transcription factor (Sigma) | 0.03 | Archaeplastida | |
| Zm00001e011616_P008 | No alias | basal transcription factor (Sigma) | 0.02 | Archaeplastida | |
| Zm00001e021420_P001 | No alias | basal transcription factor (Sigma) | 0.07 | Archaeplastida | |
| Zm00001e021683_P001 | No alias | basal transcription factor (Sigma) | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Neighborhood |
| MF | GO:0005524 | ATP binding | IEP | Neighborhood |
| BP | GO:0006399 | tRNA metabolic process | IEP | Neighborhood |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Neighborhood |
| MF | GO:0008144 | drug binding | IEP | Neighborhood |
| CC | GO:0009507 | chloroplast | IEP | Neighborhood |
| CC | GO:0009536 | plastid | IEP | Neighborhood |
| MF | GO:0016874 | ligase activity | IEP | Neighborhood |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Neighborhood |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
| BP | GO:0043038 | amino acid activation | IEP | Neighborhood |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Neighborhood |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |