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  5. Pp3c1_3700V3.1

Pp3c1_3700V3.1


Description : LisH dimerisation motif;WD40/YVTN repeat-like-containing domain


Gene families : OG0000691 (Archaeplastida) Phylogenetic Tree(s): OG0000691_tree ,
OG_05_0000885 (LandPlants) Phylogenetic Tree(s): OG_05_0000885_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_3700V3.1
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00037p00238300 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional repression.LUG... 0.02 Archaeplastida
AT2G32700 LUH LEUNIG_homolog 0.02 Archaeplastida
GSVIVT01015458001 No alias RNA biosynthesis.transcriptional repression.LUG... 0.02 Archaeplastida
LOC_Os01g08190.1 No alias transcriptional co-repressor (LUG) 0.02 Archaeplastida
LOC_Os01g42260.1 No alias transcriptional co-repressor (LUG) 0.02 Archaeplastida
LOC_Os01g42270.1 No alias transcriptional co-repressor (LUG) 0.02 Archaeplastida
LOC_Os04g43130.1 No alias transcriptional co-repressor (LUG) 0.03 Archaeplastida
MA_248112g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_34795g0010 No alias transcriptional co-repressor (LUG) 0.02 Archaeplastida
Mp1g15060.1 No alias transcriptional co-repressor (LUG) 0.06 Archaeplastida
Pp3c1_3770V3.1 No alias LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 0.02 Archaeplastida
Pp3c2_31720V3.1 No alias LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 0.04 Archaeplastida
Solyc06g065640.3.1 No alias transcriptional co-repressor (LUG) 0.04 Archaeplastida
Zm00001e016200_P001 No alias transcriptional co-repressor (LUG) 0.03 Archaeplastida
Zm00001e020658_P005 No alias transcriptional co-repressor (LUG) 0.05 Archaeplastida
Zm00001e027845_P004 No alias transcriptional co-repressor (LUG) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
InterPro domains Description Start Stop
IPR006594 LisH 10 36
IPR001680 WD40_repeat 657 693
IPR001680 WD40_repeat 737 773
IPR001680 WD40_repeat 573 607
IPR001680 WD40_repeat 825 860
IPR001680 WD40_repeat 615 649
No external refs found!