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  5. AT4G25515

AT4G25515 (SLK3)


Aliases : SLK3

Description : SEUSS-like 3


Gene families : OG0001132 (Archaeplastida) Phylogenetic Tree(s): OG0001132_tree ,
OG_05_0001403 (LandPlants) Phylogenetic Tree(s): OG_05_0001403_tree ,
OG_06_0001294 (SeedPlants) Phylogenetic Tree(s): OG_06_0001294_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G25515
Cluster HCCA: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00119460 evm_27.TU.AmTr_v1... Probable transcriptional regulator SLK2 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01010616001 No alias Probable transcriptional regulator SLK2 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_04218 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.04 Archaeplastida
Gb_04695 No alias Probable transcriptional regulator SLK2 OS=Arabidopsis... 0.03 Archaeplastida
MA_12796g0010 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.03 Archaeplastida
MA_208023g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c16_15040V3.1 No alias SEUSS transcriptional co-regulator 0.03 Archaeplastida
Pp3c16_1990V3.1 No alias SEUSS transcriptional co-regulator 0.03 Archaeplastida
Pp3c6_27010V3.1 No alias SEUSS transcriptional co-regulator 0.04 Archaeplastida
Solyc03g026190.3.1 No alias Probable transcriptional regulator SLK2 OS=Arabidopsis... 0.04 Archaeplastida
Solyc06g059750.3.1 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.04 Archaeplastida
Solyc06g059760.3.1 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e021381_P001 No alias Transcriptional corepressor SEUSS OS=Arabidopsis... 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0000976 transcription regulatory region sequence-specific DNA binding IEP Neighborhood
MF GO:0000987 proximal promoter sequence-specific DNA binding IEP Neighborhood
MF GO:0001067 regulatory region nucleic acid binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
BP GO:0009791 post-embryonic development IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0010029 regulation of seed germination IEP Neighborhood
BP GO:0010030 positive regulation of seed germination IEP Neighborhood
BP GO:0010050 vegetative phase change IEP Neighborhood
BP GO:0010229 inflorescence development IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0016246 RNA interference IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018195 peptidyl-arginine modification IEP Neighborhood
BP GO:0018216 peptidyl-arginine methylation IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0032451 demethylase activity IEP Neighborhood
MF GO:0032452 histone demethylase activity IEP Neighborhood
MF GO:0033746 histone demethylase activity (H3-R2 specific) IEP Neighborhood
MF GO:0033749 histone demethylase activity (H4-R3 specific) IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0034969 histone arginine methylation IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
BP GO:0043985 histone H4-R3 methylation IEP Neighborhood
MF GO:0044212 transcription regulatory region DNA binding IEP Neighborhood
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0048367 shoot system development IEP Neighborhood
BP GO:0048582 positive regulation of post-embryonic development IEP Neighborhood
BP GO:0048608 reproductive structure development IEP Neighborhood
BP GO:0048731 system development IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051240 positive regulation of multicellular organismal process IEP Neighborhood
BP GO:0051253 negative regulation of RNA metabolic process IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
BP GO:0090567 reproductive shoot system development IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Neighborhood
MF GO:1990837 sequence-specific double-stranded DNA binding IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR029005 LIM-bd/SEUSS 164 424
No external refs found!