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  5. Pp3c1_4040V3.1

Pp3c1_4040V3.1


Description : Pectin lyase-like superfamily protein


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_4040V3.1
Cluster HCCA: Cluster_228

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00014p00175040 evm_27.TU.AmTr_v1... Putative pectate lyase 2 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00039p00186640 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
AMTR_s00039p00189000 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
AMTR_s00120p00111300 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
AMTR_s00171p00044290 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
AT1G11920 No alias Pectin lyase-like superfamily protein 0.08 Archaeplastida
AT3G24230 No alias Pectate lyase family protein 0.03 Archaeplastida
AT3G24670 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT3G27400 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT4G22080 RHS14 root hair specific 14 0.02 Archaeplastida
AT4G24780 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
GSVIVT01003984001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01016208001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
GSVIVT01016209001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.07 Archaeplastida
GSVIVT01024239001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
GSVIVT01033671001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
Gb_02248 No alias pectate lyase 0.06 Archaeplastida
Gb_19802 No alias pectate lyase 0.02 Archaeplastida
LOC_Os04g05050.1 No alias pectate lyase 0.03 Archaeplastida
LOC_Os10g31910.1 No alias pectate lyase 0.03 Archaeplastida
MA_101171g0010 No alias pectate lyase 0.04 Archaeplastida
MA_10205415g0010 No alias pectate lyase 0.03 Archaeplastida
MA_10332686g0010 No alias pectate lyase 0.02 Archaeplastida
MA_103716g0010 No alias pectate lyase 0.03 Archaeplastida
MA_10426822g0020 No alias pectate lyase 0.04 Archaeplastida
MA_10428603g0020 No alias pectate lyase 0.03 Archaeplastida
MA_10430145g0020 No alias pectate lyase 0.03 Archaeplastida
MA_10430145g0030 No alias pectate lyase 0.06 Archaeplastida
MA_10437227g0010 No alias pectate lyase 0.04 Archaeplastida
MA_10437227g0020 No alias pectate lyase 0.02 Archaeplastida
MA_10437227g0030 No alias pectate lyase 0.03 Archaeplastida
MA_1164682g0010 No alias pectate lyase 0.03 Archaeplastida
MA_474372g0010 No alias pectate lyase 0.07 Archaeplastida
MA_6474333g0010 No alias Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... 0.05 Archaeplastida
MA_91467g0020 No alias pectate lyase 0.02 Archaeplastida
MA_956526g0010 No alias pectate lyase 0.02 Archaeplastida
MA_97947g0010 No alias pectate lyase 0.02 Archaeplastida
Pp3c10_20140V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c3_20320V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Solyc02g080910.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc02g093580.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc03g111690.4.1 No alias pectate lyase 0.03 Archaeplastida
Solyc09g008380.3.1 No alias pectate lyase 0.03 Archaeplastida
Solyc09g091430.4.1 No alias pectate lyase 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

No external refs found!