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  5. Pp3c1_8170V3.1

Pp3c1_8170V3.1


Description : plastid transcriptionally active 3


Gene families : OG0004175 (Archaeplastida) Phylogenetic Tree(s): OG0004175_tree ,
OG_05_0006431 (LandPlants) Phylogenetic Tree(s): OG_05_0006431_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_8170V3.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AT3G04260 PTAC3 plastid transcriptionally active 3 0.18 Archaeplastida
GSVIVT01026351001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.08 Archaeplastida
Gb_05602 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os10g32540.1 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.06 Archaeplastida
MA_7597000g0010 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.07 Archaeplastida
MA_86107g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
Mp2g04680.1 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.12 Archaeplastida
Solyc04g050540.4.1 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.13 Archaeplastida
Zm00001e004642_P001 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!