- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: effector of transcription2 (TAIR:AT5G56780.1); Has 75 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Gene families : OG0007583 (Archaeplastida) Phylogenetic Tree(s): OG0007583_tree ,
OG_05_0006159 (LandPlants) Phylogenetic Tree(s): OG_05_0006159_tree ,
OG_06_0007788 (SeedPlants) Phylogenetic Tree(s): OG_06_0007788_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT4G26170 | |
| Cluster | HCCA: Cluster_116 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| MA_9976729g0010 | No alias | transcription factor (HRT) | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | ND | Interproscan |
| CC | GO:0005576 | extracellular region | ISM | Interproscan |
| BP | GO:0008150 | biological_process | ND | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000419 | RNA polymerase V complex | IEP | Neighborhood |
| CC | GO:0000428 | DNA-directed RNA polymerase complex | IEP | Neighborhood |
| BP | GO:0003002 | regionalization | IEP | Neighborhood |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Neighborhood |
| CC | GO:0005665 | RNA polymerase II, core complex | IEP | Neighborhood |
| BP | GO:0007389 | pattern specification process | IEP | Neighborhood |
| MF | GO:0008417 | fucosyltransferase activity | IEP | Neighborhood |
| MF | GO:0008810 | cellulase activity | IEP | Neighborhood |
| BP | GO:0009888 | tissue development | IEP | Neighborhood |
| BP | GO:0010026 | trichome differentiation | IEP | Neighborhood |
| BP | GO:0010051 | xylem and phloem pattern formation | IEP | Neighborhood |
| BP | GO:0010093 | specification of floral organ identity | IEP | Neighborhood |
| BP | GO:0010305 | leaf vascular tissue pattern formation | IEP | Neighborhood |
| BP | GO:0010493 | Lewis a epitope biosynthetic process | IEP | Neighborhood |
| BP | GO:0010588 | cotyledon vascular tissue pattern formation | IEP | Neighborhood |
| CC | GO:0030880 | RNA polymerase complex | IEP | Neighborhood |
| CC | GO:0033597 | mitotic checkpoint complex | IEP | Neighborhood |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Neighborhood |
| BP | GO:0048507 | meristem development | IEP | Neighborhood |
| CC | GO:0055029 | nuclear DNA-directed RNA polymerase complex | IEP | Neighborhood |
| CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | Neighborhood |
| BP | GO:0090701 | specification of plant organ identity | IEP | Neighborhood |
| MF | GO:0097747 | RNA polymerase activity | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |