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  5. Pp3c21_2370V3.1

Pp3c21_2370V3.1


Description : No annotation


Gene families : OG0007973 (Archaeplastida) Phylogenetic Tree(s): OG0007973_tree ,
OG_05_0008836 (LandPlants) Phylogenetic Tree(s): OG_05_0008836_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c21_2370V3.1
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00196300 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 Archaeplastida
AT2G01640 No alias unknown protein; Has 51 Blast hits to 51 proteins in 21... 0.06 Archaeplastida
Cpa|evm.model.tig00001304.4 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 Archaeplastida
Smo403169 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 Archaeplastida
Zm00001e017849_P005 No alias SLX9 pre-rRNA cleavage factor involved in ITS1 rRNA removal 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!