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  5. Pp3c22_21010V3.1

Pp3c22_21010V3.1


Description : Nucleic acid-binding, OB-fold-like protein


Gene families : OG0007010 (Archaeplastida) Phylogenetic Tree(s): OG0007010_tree ,
OG_05_0008384 (LandPlants) Phylogenetic Tree(s): OG_05_0008384_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c22_21010V3.1
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00051p00167860 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.EXO9 core... 0.02 Archaeplastida
Cre07.g312750 No alias RNA processing.RNA decay.exosome complex.EXO9 core... 0.02 Archaeplastida
LOC_Os02g57070.1 No alias component CSL4 of exosome EXO9 core complex 0.06 Archaeplastida
MA_87468g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp8g08660.1 No alias component CSL4 of exosome EXO9 core complex 0.02 Archaeplastida
Solyc04g050480.4.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e016218_P001 No alias component CSL4 of exosome EXO9 core complex 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Neighborhood
CC GO:0005743 mitochondrial inner membrane IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
CC GO:0019866 organelle inner membrane IEP Neighborhood
BP GO:0030150 protein import into mitochondrial matrix IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
CC GO:0061617 MICOS complex IEP Neighborhood
BP GO:0065002 intracellular protein transmembrane transport IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0070585 protein localization to mitochondrion IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0071806 protein transmembrane transport IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072655 establishment of protein localization to mitochondrion IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098799 outer mitochondrial membrane protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
BP GO:1990542 mitochondrial transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR025721 Exosome_cplx_N_dom 9 43
IPR019495 EXOSC1 76 139
No external refs found!