AT4G28520 (CRU3, CRC)

Aliases : CRU3, CRC

Description : cruciferin 3

Gene families : OG0001123 (Archaeplastida) Phylogenetic Tree(s): OG0001123_tree ,
OG_05_0000617 (LandPlants) Phylogenetic Tree(s): OG_05_0000617_tree ,
OG_06_0000316 (SeedPlants) Phylogenetic Tree(s): OG_06_0000316_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G28520
Cluster	HCCA: Cluster_66

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00067p00027690	evm_27.TU.AmTr_v1...	11S globulin seed storage protein 2 OS=Sesamum indicum	0.03	Archaeplastida
GSVIVT01028337001	No alias	11S globulin subunit beta OS=Cucurbita maxima	0.04	Archaeplastida
GSVIVT01028338001	No alias	11S globulin subunit beta OS=Cucurbita maxima	0.04	Archaeplastida
GSVIVT01028341001	No alias	11S globulin subunit beta OS=Cucurbita maxima	0.04	Archaeplastida
Gb_01530	No alias	no description available(sp\|a0a222nnm9\|cos1_cocnu : 359.0)	0.03	Archaeplastida
Gb_12801	No alias	no description available(sp\|a0a222nnm9\|cos1_cocnu : 216.0)	0.03	Archaeplastida
Gb_18954	No alias	no description available(sp\|a0a222nnm9\|cos1_cocnu : 172.0)	0.03	Archaeplastida
Gb_26733	No alias	no description available(sp\|a0a222nnm9\|cos1_cocnu : 139.0)	0.04	Archaeplastida
Gb_30214	No alias	no description available(sp\|a0a1l6k371\|jugn4_jugni : 301.0)	0.04	Archaeplastida
Gb_41467	No alias	no description available(sp\|a0a222nnm9\|cos1_cocnu : 82.0)	0.02	Archaeplastida
MA_28880g0010	No alias	no description available(sp\|a0a1l6k371\|jugn4_jugni : 87.0)	0.03	Archaeplastida
MA_28880g0020	No alias	12S seed storage protein CRD OS=Arabidopsis thaliana...	0.02	Archaeplastida
MA_467g0010	No alias	no description available(sp\|q2tpw5\|jugr4_jugre : 99.8)	0.03	Archaeplastida
MA_527006g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_67677g0010	No alias	no description available(sp\|q2tpw5\|jugr4_jugre : 254.0)	0.03	Archaeplastida
MA_7937116g0010	No alias	no description available(sp\|q2tpw5\|jugr4_jugre : 116.0)	0.04	Archaeplastida
MA_9853020g0010	No alias	12S seed storage protein CRD OS=Arabidopsis thaliana...	0.02	Archaeplastida
Solyc03g005580.2.1	No alias	no description available(sp\|a0a1l6k371\|jugn4_jugni : 439.0)	0.04	Archaeplastida
Solyc09g025210.3.1	No alias	no description available(sp\|q2tpw5\|jugr4_jugre : 424.0)	0.04	Archaeplastida
Solyc09g072560.4.1	No alias	11S globulin seed storage protein 2 OS=Sesamum indicum...	0.04	Archaeplastida
Solyc09g090150.4.1	No alias	no description available(sp\|a0a1l6k371\|jugn4_jugni : 418.0)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009409	response to cold	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009640	photomorphogenesis	RCA	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009735	response to cytokinin	IDA	Interproscan
BP	GO:0009737	response to abscisic acid	IEP	Interproscan
BP	GO:0009737	response to abscisic acid	RCA	Interproscan
BP	GO:0009756	carbohydrate mediated signaling	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	RCA	Interproscan
BP	GO:0009793	embryo development ending in seed dormancy	TAS	Interproscan
BP	GO:0009845	seed germination	RCA	Interproscan
BP	GO:0009909	regulation of flower development	RCA	Interproscan
BP	GO:0009933	meristem structural organization	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010162	seed dormancy process	RCA	Interproscan
BP	GO:0010182	sugar mediated signaling pathway	RCA	Interproscan
BP	GO:0010228	vegetative to reproductive phase transition of meristem	RCA	Interproscan
BP	GO:0010431	seed maturation	IDA	Interproscan
BP	GO:0016567	protein ubiquitination	RCA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019915	lipid storage	RCA	Interproscan
BP	GO:0021700	developmental maturation	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022611	dormancy process	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032870	cellular response to hormone stimulus	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0042735	protein body	TAS	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0045735	nutrient reservoir activity	IDA	Interproscan
MF	GO:0045735	nutrient reservoir activity	ISS	Interproscan
BP	GO:0048366	leaf development	None	Extended
BP	GO:0048532	anatomical structure arrangement	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048825	cotyledon development	RCA	Interproscan
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050826	response to freezing	RCA	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051235	maintenance of location	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051301	cell division	RCA	Interproscan
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
BP	GO:0071215	cellular response to abscisic acid stimulus	IDA	Interproscan
BP	GO:0071229	cellular response to acid chemical	None	Extended
BP	GO:0071310	cellular response to organic substance	None	Extended
BP	GO:0071396	cellular response to lipid	None	Extended
BP	GO:0071495	cellular response to endogenous stimulus	None	Extended
BP	GO:0071695	anatomical structure maturation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
BP	GO:0097306	cellular response to alcohol	None	Extended
BP	GO:0099402	plant organ development	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1901701	cellular response to oxygen-containing compound	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000578	embryonic axis specification	IEP	Neighborhood
MF	GO:0004392	heme oxygenase (decyclizing) activity	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
BP	GO:0006082	organic acid metabolic process	IEP	Neighborhood
BP	GO:0006629	lipid metabolic process	IEP	Neighborhood
BP	GO:0006631	fatty acid metabolic process	IEP	Neighborhood
BP	GO:0006720	isoprenoid metabolic process	IEP	Neighborhood
BP	GO:0006721	terpenoid metabolic process	IEP	Neighborhood
BP	GO:0006869	lipid transport	IEP	Neighborhood
MF	GO:0008289	lipid binding	IEP	Neighborhood
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Neighborhood
BP	GO:0008610	lipid biosynthetic process	IEP	Neighborhood
BP	GO:0009685	gibberellin metabolic process	IEP	Neighborhood
BP	GO:0009686	gibberellin biosynthetic process	IEP	Neighborhood
BP	GO:0009740	gibberellic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009755	hormone-mediated signaling pathway	IEP	Neighborhood
BP	GO:0009798	axis specification	IEP	Neighborhood
BP	GO:0009880	embryonic pattern specification	IEP	Neighborhood
BP	GO:0009942	longitudinal axis specification	IEP	Neighborhood
BP	GO:0010476	gibberellin mediated signaling pathway	IEP	Neighborhood
BP	GO:0010654	apical cell fate commitment	IEP	Neighborhood
BP	GO:0010817	regulation of hormone levels	IEP	Neighborhood
BP	GO:0016053	organic acid biosynthetic process	IEP	Neighborhood
BP	GO:0016101	diterpenoid metabolic process	IEP	Neighborhood
BP	GO:0016102	diterpenoid biosynthetic process	IEP	Neighborhood
BP	GO:0016114	terpenoid biosynthetic process	IEP	Neighborhood
BP	GO:0019752	carboxylic acid metabolic process	IEP	Neighborhood
MF	GO:0019900	kinase binding	IEP	Neighborhood
MF	GO:0019901	protein kinase binding	IEP	Neighborhood
BP	GO:0031407	oxylipin metabolic process	IEP	Neighborhood
BP	GO:0031408	oxylipin biosynthetic process	IEP	Neighborhood
BP	GO:0034389	lipid droplet organization	IEP	Neighborhood
BP	GO:0042445	hormone metabolic process	IEP	Neighborhood
BP	GO:0042446	hormone biosynthetic process	IEP	Neighborhood
MF	GO:0043424	protein histidine kinase binding	IEP	Neighborhood
BP	GO:0043436	oxoacid metabolic process	IEP	Neighborhood
BP	GO:0044255	cellular lipid metabolic process	IEP	Neighborhood
BP	GO:0044283	small molecule biosynthetic process	IEP	Neighborhood
BP	GO:0045165	cell fate commitment	IEP	Neighborhood
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Neighborhood
BP	GO:0048859	formation of anatomical boundary	IEP	Neighborhood
MF	GO:0071614	linoleic acid epoxygenase activity	IEP	Neighborhood
BP	GO:0080050	regulation of seed development	IEP	Neighborhood
BP	GO:0090451	cotyledon boundary formation	IEP	Neighborhood
BP	GO:0090691	formation of plant organ boundary	IEP	Neighborhood
BP	GO:2000033	regulation of seed dormancy process	IEP	Neighborhood
BP	GO:2000034	regulation of seed maturation	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006045	Cupin_1	45	252
IPR006045	Cupin_1	347	494

External Links

No external refs found!

AT4G28520 (CRU3, CRC)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation