AT4G29080 (IAA27, PAP2)

Aliases : IAA27, PAP2

Description : phytochrome-associated protein 2

Gene families : OG0000129 (Archaeplastida) Phylogenetic Tree(s): OG0000129_tree ,
OG_05_0000051 (LandPlants) Phylogenetic Tree(s): OG_05_0000051_tree ,
OG_06_0000110 (SeedPlants) Phylogenetic Tree(s): OG_06_0000110_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G29080
Cluster	HCCA: Cluster_30

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00266760	evm_27.TU.AmTr_v1...	Auxin-responsive protein IAA16 OS=Arabidopsis thaliana	0.02	Archaeplastida
AT1G04250	AXR3, IAA17	AUX/IAA transcriptional regulator family protein	0.04	Archaeplastida
AT4G28640	IAA11	indole-3-acetic acid inducible 11	0.03	Archaeplastida
GSVIVT01001486001	No alias	No description available	0.03	Archaeplastida
GSVIVT01017711001	No alias	Auxin-responsive protein IAA4 OS=Oryza sativa subsp. indica	0.07	Archaeplastida
GSVIVT01028242001	No alias	Auxin-responsive protein IAA4 OS=Oryza sativa subsp. indica	0.03	Archaeplastida
GSVIVT01035295001	No alias	Phytohormones.auxin.perception and signal...	0.03	Archaeplastida
GSVIVT01036283001	No alias	Auxin-induced protein AUX28 OS=Glycine max	0.04	Archaeplastida
Gb_13092	No alias	Auxin-responsive protein IAA13 OS=Arabidopsis thaliana...	0.05	Archaeplastida
Gb_16134	No alias	repressor component Aux/IAA of auxin receptor complex	0.03	Archaeplastida
Gb_36672	No alias	Auxin-responsive protein IAA9 OS=Arabidopsis thaliana...	0.02	Archaeplastida
LOC_Os01g13030.1	No alias	Auxin-responsive protein IAA3 OS=Oryza sativa subsp....	0.04	Archaeplastida
LOC_Os02g13520.1	No alias	repressor component Aux/IAA of auxin receptor complex	0.04	Archaeplastida
LOC_Os02g49160.1	No alias	Auxin-responsive protein IAA8 OS=Oryza sativa subsp....	0.03	Archaeplastida
LOC_Os03g43400.1	No alias	Auxin-responsive protein IAA11 OS=Oryza sativa subsp....	0.08	Archaeplastida
LOC_Os03g43410.1	No alias	Auxin-responsive protein IAA12 OS=Oryza sativa subsp....	0.07	Archaeplastida
LOC_Os03g53150.1	No alias	Auxin-responsive protein IAA13 OS=Oryza sativa subsp....	0.06	Archaeplastida
LOC_Os03g58350.1	No alias	Auxin-responsive protein IAA14 OS=Oryza sativa subsp....	0.06	Archaeplastida
LOC_Os05g08570.1	No alias	Auxin-responsive protein IAA15 OS=Oryza sativa subsp....	0.03	Archaeplastida
LOC_Os05g14180.1	No alias	Auxin-responsive protein IAA17 OS=Oryza sativa subsp....	0.08	Archaeplastida
LOC_Os06g07040.1	No alias	Auxin-responsive protein IAA20 OS=Oryza sativa subsp....	0.03	Archaeplastida
LOC_Os06g22870.1	No alias	Auxin-responsive protein IAA21 OS=Oryza sativa subsp....	0.07	Archaeplastida
LOC_Os06g39590.1	No alias	Auxin-responsive protein IAA23 OS=Oryza sativa subsp....	0.04	Archaeplastida
LOC_Os09g35870.1	No alias	Auxin-responsive protein IAA26 OS=Oryza sativa subsp....	0.01	Archaeplastida
LOC_Os12g40890.1	No alias	Auxin-responsive protein IAA30 OS=Oryza sativa subsp....	0.09	Archaeplastida
LOC_Os12g40900.1	No alias	Auxin-responsive protein IAA31 OS=Oryza sativa subsp....	0.05	Archaeplastida
MA_123046g0010	No alias	repressor component Aux/IAA of auxin receptor complex	0.03	Archaeplastida
MA_14280g0010	No alias	Auxin-responsive protein IAA13 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Mp6g05000.1	No alias	Auxin-responsive protein IAA17 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Pp3c24_6610V3.1	No alias	indole-3-acetic acid 7	0.03	Archaeplastida
Smo116126	No alias	Auxin-responsive protein IAA31 OS=Oryza sativa subsp. japonica	0.03	Archaeplastida
Solyc01g097290.4.1	No alias	Auxin-responsive protein IAA16 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Solyc06g053830.3.1	No alias	Auxin-responsive protein IAA16 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Solyc09g064530.3.1	No alias	Auxin-responsive protein IAA13 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Solyc09g065850.4.1	No alias	Auxin-induced protein 22D OS=Vigna radiata var. radiata...	0.03	Archaeplastida
Solyc09g083280.3.1	No alias	Auxin-induced protein IAA4 OS=Pisum sativum...	0.02	Archaeplastida
Solyc09g083290.3.1	No alias	Auxin-responsive protein IAA14 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Solyc12g007230.2.1	No alias	Auxin-responsive protein IAA27 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Solyc12g096980.3.1	No alias	Auxin-responsive protein IAA12 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Zm00001e005073_P001	No alias	Auxin-responsive protein IAA12 OS=Oryza sativa subsp....	0.04	Archaeplastida
Zm00001e012059_P002	No alias	Auxin-responsive protein IAA13 OS=Oryza sativa subsp....	0.05	Archaeplastida
Zm00001e012423_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e016596_P002	No alias	repressor component Aux/IAA of auxin receptor complex	0.01	Archaeplastida
Zm00001e016705_P001	No alias	Auxin-responsive protein IAA1 OS=Oryza sativa subsp....	0.02	Archaeplastida
Zm00001e018053_P002	No alias	Auxin-responsive protein IAA30 OS=Oryza sativa subsp....	0.09	Archaeplastida
Zm00001e018054_P001	No alias	Auxin-responsive protein IAA31 OS=Oryza sativa subsp....	0.05	Archaeplastida
Zm00001e023600_P003	No alias	Auxin-responsive protein IAA10 OS=Oryza sativa subsp....	0.04	Archaeplastida
Zm00001e030609_P002	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e032398_P001	No alias	Auxin-responsive protein IAA19 OS=Oryza sativa subsp....	0.02	Archaeplastida
Zm00001e032955_P001	No alias	Auxin-responsive protein IAA24 OS=Oryza sativa subsp....	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006417	regulation of translation	ISS	Interproscan
BP	GO:0007389	pattern specification process	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	ISS	Interproscan
BP	GO:0009733	response to auxin	TAS	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010016	shoot system morphogenesis	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010608	posttranscriptional regulation of gene expression	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032268	regulation of cellular protein metabolic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034248	regulation of cellular amide metabolic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048438	floral whorl development	RCA	Interproscan
BP	GO:0048439	flower morphogenesis	RCA	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090698	post-embryonic plant morphogenesis	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0001763	morphogenesis of a branching structure	IEP	Neighborhood
BP	GO:0003002	regionalization	IEP	Neighborhood
MF	GO:0003846	2-acylglycerol O-acyltransferase activity	IEP	Neighborhood
MF	GO:0004489	methylenetetrahydrofolate reductase (NAD(P)H) activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004622	lysophospholipase activity	IEP	Neighborhood
MF	GO:0004650	polygalacturonase activity	IEP	Neighborhood
CC	GO:0005794	Golgi apparatus	IEP	Neighborhood
CC	GO:0005885	Arp2/3 protein complex	IEP	Neighborhood
CC	GO:0005886	plasma membrane	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0006073	cellular glucan metabolic process	IEP	Neighborhood
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0007015	actin filament organization	IEP	Neighborhood
BP	GO:0007155	cell adhesion	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Neighborhood
BP	GO:0009058	biosynthetic process	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0009698	phenylpropanoid metabolic process	IEP	Neighborhood
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	Neighborhood
BP	GO:0009799	specification of symmetry	IEP	Neighborhood
BP	GO:0009808	lignin metabolic process	IEP	Neighborhood
BP	GO:0009809	lignin biosynthetic process	IEP	Neighborhood
BP	GO:0009832	plant-type cell wall biogenesis	IEP	Neighborhood
BP	GO:0009834	plant-type secondary cell wall biogenesis	IEP	Neighborhood
BP	GO:0009855	determination of bilateral symmetry	IEP	Neighborhood
BP	GO:0009887	animal organ morphogenesis	IEP	Neighborhood
BP	GO:0009888	tissue development	IEP	Neighborhood
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0009893	positive regulation of metabolic process	IEP	Neighborhood
BP	GO:0009900	dehiscence	IEP	Neighborhood
BP	GO:0009901	anther dehiscence	IEP	Neighborhood
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
BP	GO:0010014	meristem initiation	IEP	Neighborhood
BP	GO:0010047	fruit dehiscence	IEP	Neighborhood
BP	GO:0010051	xylem and phloem pattern formation	IEP	Neighborhood
BP	GO:0010065	primary meristem tissue development	IEP	Neighborhood
BP	GO:0010067	procambium histogenesis	IEP	Neighborhood
BP	GO:0010073	meristem maintenance	IEP	Neighborhood
BP	GO:0010076	maintenance of floral meristem identity	IEP	Neighborhood
BP	GO:0010077	maintenance of inflorescence meristem identity	IEP	Neighborhood
BP	GO:0010087	phloem or xylem histogenesis	IEP	Neighborhood
BP	GO:0010089	xylem development	IEP	Neighborhood
BP	GO:0010115	regulation of abscisic acid biosynthetic process	IEP	Neighborhood
BP	GO:0010116	positive regulation of abscisic acid biosynthetic process	IEP	Neighborhood
BP	GO:0010215	cellulose microfibril organization	IEP	Neighborhood
BP	GO:0010223	secondary shoot formation	IEP	Neighborhood
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	Neighborhood
BP	GO:0010346	shoot axis formation	IEP	Neighborhood
BP	GO:0010383	cell wall polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0010395	rhamnogalacturonan I metabolic process	IEP	Neighborhood
BP	GO:0010400	rhamnogalacturonan I side chain metabolic process	IEP	Neighborhood
BP	GO:0010410	hemicellulose metabolic process	IEP	Neighborhood
BP	GO:0010413	glucuronoxylan metabolic process	IEP	Neighborhood
BP	GO:0010417	glucuronoxylan biosynthetic process	IEP	Neighborhood
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010628	positive regulation of gene expression	IEP	Neighborhood
MF	GO:0015020	glucuronosyltransferase activity	IEP	Neighborhood
CC	GO:0015630	microtubule cytoskeleton	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Neighborhood
MF	GO:0016411	acylglycerol O-acyltransferase activity	IEP	Neighborhood
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016759	cellulose synthase activity	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
BP	GO:0016926	protein desumoylation	IEP	Neighborhood
BP	GO:0017157	regulation of exocytosis	IEP	Neighborhood
BP	GO:0018205	peptidyl-lysine modification	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019747	regulation of isoprenoid metabolic process	IEP	Neighborhood
BP	GO:0022610	biological adhesion	IEP	Neighborhood
BP	GO:0030198	extracellular matrix organization	IEP	Neighborhood
BP	GO:0030243	cellulose metabolic process	IEP	Neighborhood
BP	GO:0030244	cellulose biosynthetic process	IEP	Neighborhood
MF	GO:0030775	glucuronoxylan 4-O-methyltransferase activity	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0032890	regulation of organic acid transport	IEP	Neighborhood
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0042546	cell wall biogenesis	IEP	Neighborhood
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	Neighborhood
BP	GO:0043062	extracellular structure organization	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
BP	GO:0043455	regulation of secondary metabolic process	IEP	Neighborhood
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044038	cell wall macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0044042	glucan metabolic process	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
BP	GO:0044087	regulation of cellular component biogenesis	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044249	cellular biosynthetic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	Neighborhood
BP	GO:0045491	xylan metabolic process	IEP	Neighborhood
BP	GO:0045492	xylan biosynthetic process	IEP	Neighborhood
BP	GO:0045828	positive regulation of isoprenoid metabolic process	IEP	Neighborhood
BP	GO:0045834	positive regulation of lipid metabolic process	IEP	Neighborhood
BP	GO:0045893	positive regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
MF	GO:0046527	glucosyltransferase activity	IEP	Neighborhood
BP	GO:0046889	positive regulation of lipid biosynthetic process	IEP	Neighborhood
BP	GO:0048457	floral whorl morphogenesis	IEP	Neighborhood
BP	GO:0048507	meristem development	IEP	Neighborhood
BP	GO:0048508	embryonic meristem development	IEP	Neighborhood
BP	GO:0048518	positive regulation of biological process	IEP	Neighborhood
BP	GO:0048522	positive regulation of cellular process	IEP	Neighborhood
BP	GO:0048609	multicellular organismal reproductive process	IEP	Neighborhood
BP	GO:0048645	animal organ formation	IEP	Neighborhood
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	Neighborhood
BP	GO:0051046	regulation of secretion	IEP	Neighborhood
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0051273	beta-glucan metabolic process	IEP	Neighborhood
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Neighborhood
BP	GO:0051648	vesicle localization	IEP	Neighborhood
BP	GO:0051650	establishment of vesicle localization	IEP	Neighborhood
BP	GO:0051952	regulation of amine transport	IEP	Neighborhood
BP	GO:0051955	regulation of amino acid transport	IEP	Neighborhood
BP	GO:0060627	regulation of vesicle-mediated transport	IEP	Neighborhood
BP	GO:0062013	positive regulation of small molecule metabolic process	IEP	Neighborhood
BP	GO:0065001	specification of axis polarity	IEP	Neighborhood
BP	GO:0070589	cellular component macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0070592	cell wall polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0070646	protein modification by small protein removal	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Neighborhood
BP	GO:0080006	internode patterning	IEP	Neighborhood
MF	GO:0080116	glucuronoxylan glucuronosyltransferase activity	IEP	Neighborhood
BP	GO:0080143	regulation of amino acid export	IEP	Neighborhood
BP	GO:0097435	supramolecular fiber organization	IEP	Neighborhood
BP	GO:1900376	regulation of secondary metabolite biosynthetic process	IEP	Neighborhood
BP	GO:1900378	positive regulation of secondary metabolite biosynthetic process	IEP	Neighborhood
BP	GO:1901141	regulation of lignin biosynthetic process	IEP	Neighborhood
BP	GO:1901428	regulation of syringal lignin biosynthetic process	IEP	Neighborhood
BP	GO:1901430	positive regulation of syringal lignin biosynthetic process	IEP	Neighborhood
BP	GO:1901576	organic substance biosynthetic process	IEP	Neighborhood
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Neighborhood
BP	GO:1902930	regulation of alcohol biosynthetic process	IEP	Neighborhood
BP	GO:1902932	positive regulation of alcohol biosynthetic process	IEP	Neighborhood
BP	GO:1903338	regulation of cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:1903530	regulation of secretion by cell	IEP	Neighborhood
BP	GO:1903789	regulation of amino acid transmembrane transport	IEP	Neighborhood
BP	GO:2000652	regulation of secondary cell wall biogenesis	IEP	Neighborhood
BP	GO:2000762	regulation of phenylpropanoid metabolic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR033389	AUX/IAA_dom	43	296

External Links

No external refs found!

AT4G29080 (IAA27, PAP2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation