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  5. Pp3c23_9370V3.1

Pp3c23_9370V3.1


Description : RNA helicase, putative


Gene families : OG0001972 (Archaeplastida) Phylogenetic Tree(s): OG0001972_tree ,
OG_05_0003008 (LandPlants) Phylogenetic Tree(s): OG_05_0003008_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c23_9370V3.1
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00142490 evm_27.TU.AmTr_v1... RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.02 Archaeplastida
AT5G47010 UPF1, ATUPF1, LBA1 RNA helicase, putative 0.04 Archaeplastida
Cre03.g150350 No alias Regulator of nonsense transcripts 1 homolog... 0.01 Archaeplastida
GSVIVT01013247001 No alias RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.07 Archaeplastida
Gb_10556 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.03 Archaeplastida
Gb_22830 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.05 Archaeplastida
LOC_Os07g31340.1 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.1 Archaeplastida
MA_10326503g0010 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.03 Archaeplastida
MA_10426702g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_10436671g0010 No alias Regulator of nonsense transcripts 1 homolog... 0.05 Archaeplastida
MA_369530g0010 No alias Regulator of nonsense transcripts 1 homolog... 0.02 Archaeplastida
Mp1g01200.1 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.07 Archaeplastida
Solyc08g007110.4.1 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.02 Archaeplastida
Solyc08g077420.3.1 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.05 Archaeplastida
Zm00001e010427_P002 No alias UPF1 Nonsense-Mediated mRNA Decay effector protein 0.11 Archaeplastida
Zm00001e035036_P001 No alias no hits & (original description: none) 0.11 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

No external refs found!