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  5. Pp3c24_11620V3.1

Pp3c24_11620V3.1


Description : RNA polymerase II transcription mediators


Gene families : OG0003163 (Archaeplastida) Phylogenetic Tree(s): OG0003163_tree ,
OG_05_0003774 (LandPlants) Phylogenetic Tree(s): OG_05_0003774_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c24_11620V3.1
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00238900 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.04 Archaeplastida
AT4G00450 CCT, CRP RNA polymerase II transcription mediators 0.18 Archaeplastida
GSVIVT01026933001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.14 Archaeplastida
Gb_27746 No alias Mediator of RNA polymerase II transcription subunit 12... 0.05 Archaeplastida
LOC_Os07g45400.1 No alias component MED12 of kinase module of MEDIATOR... 0.08 Archaeplastida
MA_10435144g0010 No alias component MED12 of kinase module of MEDIATOR... 0.09 Archaeplastida
MA_65214g0010 No alias Mediator of RNA polymerase II transcription subunit 12... 0.06 Archaeplastida
MA_6652855g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
Smo441953 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.11 Archaeplastida
Solyc01g094620.3.1 No alias component MED12 of kinase module of MEDIATOR... 0.09 Archaeplastida
Zm00001e000051_P004 No alias component MED12 of kinase module of MEDIATOR... 0.1 Archaeplastida
Zm00001e039106_P001 No alias component MED12 of kinase module of MEDIATOR... 0.11 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!