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  5. Pp3c24_13770V3.1

Pp3c24_13770V3.1


Description : SIN3-like 3


Gene families : OG0000780 (Archaeplastida) Phylogenetic Tree(s): OG0000780_tree ,
OG_05_0001649 (LandPlants) Phylogenetic Tree(s): OG_05_0001649_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c24_13770V3.1
Cluster HCCA: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00090p00182010 evm_27.TU.AmTr_v1... Chromatin organisation.histone modifications.histone... 0.01 Archaeplastida
AT1G10450 SNL6 SIN3-like 6 0.03 Archaeplastida
AT1G24190 SNL3, ATSIN3, SIN3 SIN3-like 3 0.04 Archaeplastida
AT1G59890 SNL5 SIN3-like 5 0.03 Archaeplastida
AT3G01320 SNL1 SIN3-like 1 0.05 Archaeplastida
AT5G15020 SNL2 SIN3-like 2 0.03 Archaeplastida
Cpa|evm.model.tig00021234.23 No alias Paired amphipathic helix protein Sin3-like 3... 0.01 Archaeplastida
GSVIVT01020136001 No alias Chromatin organisation.histone modifications.histone... 0.09 Archaeplastida
GSVIVT01032579001 No alias Chromatin organisation.histone modifications.histone... 0.07 Archaeplastida
Gb_35988 No alias component SNL of histone deacetylase machineries 0.06 Archaeplastida
LOC_Os05g01020.2 No alias component SNL of histone deacetylase machineries 0.06 Archaeplastida
MA_18241g0010 No alias component SNL of histone deacetylase machineries 0.05 Archaeplastida
Mp3g02880.1 No alias component SNL of histone deacetylase machineries 0.03 Archaeplastida
Mp7g11300.1 No alias Paired amphipathic helix protein Sin3-like 2... 0.02 Archaeplastida
Smo440352 No alias Chromatin organisation.histone modifications.histone... 0.02 Archaeplastida
Solyc02g067570.3.1 No alias component SNL of histone deacetylase machineries 0.03 Archaeplastida
Solyc02g087360.4.1 No alias component SNL of histone deacetylase machineries 0.09 Archaeplastida
Zm00001e017111_P002 No alias component SNL of histone deacetylase machineries 0.07 Archaeplastida
Zm00001e025644_P001 No alias component SNL of histone deacetylase machineries 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!