| BP | GO:0000096 | sulfur amino acid metabolic process | IEP | Neighborhood |
| BP | GO:0000097 | sulfur amino acid biosynthetic process | IEP | Neighborhood |
| MF | GO:0003727 | single-stranded RNA binding | IEP | Neighborhood |
| MF | GO:0003729 | mRNA binding | IEP | Neighborhood |
| MF | GO:0003730 | mRNA 3'-UTR binding | IEP | Neighborhood |
| MF | GO:0003747 | translation release factor activity | IEP | Neighborhood |
| MF | GO:0003955 | NAD(P)H dehydrogenase (quinone) activity | IEP | Neighborhood |
| MF | GO:0004521 | endoribonuclease activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0006352 | DNA-templated transcription, initiation | IEP | Neighborhood |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006415 | translational termination | IEP | Neighborhood |
| BP | GO:0006534 | cysteine metabolic process | IEP | Neighborhood |
| BP | GO:0006605 | protein targeting | IEP | Neighborhood |
| BP | GO:0006790 | sulfur compound metabolic process | IEP | Neighborhood |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0006873 | cellular ion homeostasis | IEP | Neighborhood |
| BP | GO:0006874 | cellular calcium ion homeostasis | IEP | Neighborhood |
| BP | GO:0006897 | endocytosis | IEP | Neighborhood |
| BP | GO:0006996 | organelle organization | IEP | Neighborhood |
| MF | GO:0008079 | translation termination factor activity | IEP | Neighborhood |
| MF | GO:0008080 | N-acetyltransferase activity | IEP | Neighborhood |
| MF | GO:0008320 | protein transmembrane transporter activity | IEP | Neighborhood |
| BP | GO:0009058 | biosynthetic process | IEP | Neighborhood |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0009069 | serine family amino acid metabolic process | IEP | Neighborhood |
| BP | GO:0009070 | serine family amino acid biosynthetic process | IEP | Neighborhood |
| BP | GO:0009451 | RNA modification | IEP | Neighborhood |
| CC | GO:0009507 | chloroplast | IEP | Neighborhood |
| CC | GO:0009526 | plastid envelope | IEP | Neighborhood |
| CC | GO:0009532 | plastid stroma | IEP | Neighborhood |
| CC | GO:0009534 | chloroplast thylakoid | IEP | Neighborhood |
| CC | GO:0009535 | chloroplast thylakoid membrane | IEP | Neighborhood |
| CC | GO:0009536 | plastid | IEP | Neighborhood |
| CC | GO:0009570 | chloroplast stroma | IEP | Neighborhood |
| CC | GO:0009579 | thylakoid | IEP | Neighborhood |
| BP | GO:0009581 | detection of external stimulus | IEP | Neighborhood |
| BP | GO:0009582 | detection of abiotic stimulus | IEP | Neighborhood |
| BP | GO:0009583 | detection of light stimulus | IEP | Neighborhood |
| BP | GO:0009646 | response to absence of light | IEP | Neighborhood |
| BP | GO:0009653 | anatomical structure morphogenesis | IEP | Neighborhood |
| BP | GO:0009657 | plastid organization | IEP | Neighborhood |
| BP | GO:0009658 | chloroplast organization | IEP | Neighborhood |
| BP | GO:0009668 | plastid membrane organization | IEP | Neighborhood |
| BP | GO:0009785 | blue light signaling pathway | IEP | Neighborhood |
| MF | GO:0009881 | photoreceptor activity | IEP | Neighborhood |
| MF | GO:0009882 | blue light photoreceptor activity | IEP | Neighborhood |
| BP | GO:0009891 | positive regulation of biosynthetic process | IEP | Neighborhood |
| BP | GO:0009893 | positive regulation of metabolic process | IEP | Neighborhood |
| BP | GO:0009894 | regulation of catabolic process | IEP | Neighborhood |
| BP | GO:0009902 | chloroplast relocation | IEP | Neighborhood |
| CC | GO:0009941 | chloroplast envelope | IEP | Neighborhood |
| BP | GO:0009965 | leaf morphogenesis | IEP | Neighborhood |
| BP | GO:0009987 | cellular process | IEP | Neighborhood |
| BP | GO:0010027 | thylakoid membrane organization | IEP | Neighborhood |
| BP | GO:0010090 | trichome morphogenesis | IEP | Neighborhood |
| BP | GO:0010109 | regulation of photosynthesis | IEP | Neighborhood |
| BP | GO:0010118 | stomatal movement | IEP | Neighborhood |
| BP | GO:0010207 | photosystem II assembly | IEP | Neighborhood |
| BP | GO:0010239 | chloroplast mRNA processing | IEP | Neighborhood |
| BP | GO:0010343 | singlet oxygen-mediated programmed cell death | IEP | Neighborhood |
| BP | GO:0010468 | regulation of gene expression | IEP | Neighborhood |
| BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0010604 | positive regulation of macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0010608 | posttranscriptional regulation of gene expression | IEP | Neighborhood |
| BP | GO:0010617 | circadian regulation of calcium ion oscillation | IEP | Neighborhood |
| BP | GO:0010628 | positive regulation of gene expression | IEP | Neighborhood |
| MF | GO:0015450 | P-P-bond-hydrolysis-driven protein transmembrane transporter activity | IEP | Neighborhood |
| BP | GO:0016043 | cellular component organization | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
| BP | GO:0016143 | S-glycoside metabolic process | IEP | Neighborhood |
| BP | GO:0016144 | S-glycoside biosynthetic process | IEP | Neighborhood |
| BP | GO:0016556 | mRNA modification | IEP | Neighborhood |
| MF | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | IEP | Neighborhood |
| MF | GO:0016987 | sigma factor activity | IEP | Neighborhood |
| MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Neighborhood |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0019220 | regulation of phosphate metabolic process | IEP | Neighborhood |
| BP | GO:0019222 | regulation of metabolic process | IEP | Neighborhood |
| BP | GO:0019344 | cysteine biosynthetic process | IEP | Neighborhood |
| BP | GO:0019685 | photosynthesis, dark reaction | IEP | Neighborhood |
| BP | GO:0019725 | cellular homeostasis | IEP | Neighborhood |
| BP | GO:0019750 | chloroplast localization | IEP | Neighborhood |
| BP | GO:0019757 | glycosinolate metabolic process | IEP | Neighborhood |
| BP | GO:0019758 | glycosinolate biosynthetic process | IEP | Neighborhood |
| BP | GO:0019760 | glucosinolate metabolic process | IEP | Neighborhood |
| BP | GO:0019761 | glucosinolate biosynthetic process | IEP | Neighborhood |
| BP | GO:0022411 | cellular component disassembly | IEP | Neighborhood |
| BP | GO:0022607 | cellular component assembly | IEP | Neighborhood |
| MF | GO:0022884 | macromolecule transmembrane transporter activity | IEP | Neighborhood |
| BP | GO:0030003 | cellular cation homeostasis | IEP | Neighborhood |
| BP | GO:0030154 | cell differentiation | IEP | Neighborhood |
| BP | GO:0030522 | intracellular receptor signaling pathway | IEP | Neighborhood |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Neighborhood |
| BP | GO:0031325 | positive regulation of cellular metabolic process | IEP | Neighborhood |
| BP | GO:0031328 | positive regulation of cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0031329 | regulation of cellular catabolic process | IEP | Neighborhood |
| BP | GO:0031399 | regulation of protein modification process | IEP | Neighborhood |
| BP | GO:0031425 | chloroplast RNA processing | IEP | Neighborhood |
| CC | GO:0031967 | organelle envelope | IEP | Neighborhood |
| CC | GO:0031975 | envelope | IEP | Neighborhood |
| CC | GO:0031976 | plastid thylakoid | IEP | Neighborhood |
| CC | GO:0031984 | organelle subcompartment | IEP | Neighborhood |
| BP | GO:0032069 | regulation of nuclease activity | IEP | Neighborhood |
| BP | GO:0032074 | negative regulation of nuclease activity | IEP | Neighborhood |
| BP | GO:0032268 | regulation of cellular protein metabolic process | IEP | Neighborhood |
| BP | GO:0032502 | developmental process | IEP | Neighborhood |
| MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Neighborhood |
| BP | GO:0032984 | protein-containing complex disassembly | IEP | Neighborhood |
| CC | GO:0034357 | photosynthetic membrane | IEP | Neighborhood |
| BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
| BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Neighborhood |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Neighborhood |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
| BP | GO:0035303 | regulation of dephosphorylation | IEP | Neighborhood |
| BP | GO:0035304 | regulation of protein dephosphorylation | IEP | Neighborhood |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
| BP | GO:0036473 | cell death in response to oxidative stress | IEP | Neighborhood |
| BP | GO:0042592 | homeostatic process | IEP | Neighborhood |
| CC | GO:0042651 | thylakoid membrane | IEP | Neighborhood |
| BP | GO:0042793 | plastid transcription | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| MF | GO:0043168 | anion binding | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0043487 | regulation of RNA stability | IEP | Neighborhood |
| BP | GO:0043488 | regulation of mRNA stability | IEP | Neighborhood |
| BP | GO:0043624 | cellular protein complex disassembly | IEP | Neighborhood |
| BP | GO:0043933 | protein-containing complex subunit organization | IEP | Neighborhood |
| BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0044272 | sulfur compound biosynthetic process | IEP | Neighborhood |
| CC | GO:0044422 | organelle part | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044434 | chloroplast part | IEP | Neighborhood |
| CC | GO:0044435 | plastid part | IEP | Neighborhood |
| CC | GO:0044444 | cytoplasmic part | IEP | Neighborhood |
| CC | GO:0044446 | intracellular organelle part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| BP | GO:0044550 | secondary metabolite biosynthetic process | IEP | Neighborhood |
| BP | GO:0045038 | protein import into chloroplast thylakoid membrane | IEP | Neighborhood |
| BP | GO:0045893 | positive regulation of transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0045935 | positive regulation of nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0048518 | positive regulation of biological process | IEP | Neighborhood |
| BP | GO:0048522 | positive regulation of cellular process | IEP | Neighborhood |
| BP | GO:0048869 | cellular developmental process | IEP | Neighborhood |
| BP | GO:0048878 | chemical homeostasis | IEP | Neighborhood |
| BP | GO:0050789 | regulation of biological process | IEP | Neighborhood |
| BP | GO:0050794 | regulation of cellular process | IEP | Neighborhood |
| BP | GO:0050801 | ion homeostasis | IEP | Neighborhood |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0051173 | positive regulation of nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0051174 | regulation of phosphorus metabolic process | IEP | Neighborhood |
| BP | GO:0051179 | localization | IEP | Neighborhood |
| BP | GO:0051234 | establishment of localization | IEP | Neighborhood |
| BP | GO:0051246 | regulation of protein metabolic process | IEP | Neighborhood |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Neighborhood |
| BP | GO:0051254 | positive regulation of RNA metabolic process | IEP | Neighborhood |
| BP | GO:0051336 | regulation of hydrolase activity | IEP | Neighborhood |
| BP | GO:0051346 | negative regulation of hydrolase activity | IEP | Neighborhood |
| BP | GO:0051480 | regulation of cytosolic calcium ion concentration | IEP | Neighborhood |
| BP | GO:0051640 | organelle localization | IEP | Neighborhood |
| BP | GO:0051641 | cellular localization | IEP | Neighborhood |
| BP | GO:0051644 | plastid localization | IEP | Neighborhood |
| BP | GO:0051649 | establishment of localization in cell | IEP | Neighborhood |
| BP | GO:0051656 | establishment of organelle localization | IEP | Neighborhood |
| BP | GO:0051667 | establishment of plastid localization | IEP | Neighborhood |
| CC | GO:0055035 | plastid thylakoid membrane | IEP | Neighborhood |
| BP | GO:0055074 | calcium ion homeostasis | IEP | Neighborhood |
| BP | GO:0055080 | cation homeostasis | IEP | Neighborhood |
| BP | GO:0055082 | cellular chemical homeostasis | IEP | Neighborhood |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0060700 | regulation of ribonuclease activity | IEP | Neighborhood |
| BP | GO:0060701 | negative regulation of ribonuclease activity | IEP | Neighborhood |
| BP | GO:0061013 | regulation of mRNA catabolic process | IEP | Neighborhood |
| BP | GO:0061024 | membrane organization | IEP | Neighborhood |
| BP | GO:0065003 | protein-containing complex assembly | IEP | Neighborhood |
| BP | GO:0065007 | biological regulation | IEP | Neighborhood |
| BP | GO:0065008 | regulation of biological quality | IEP | Neighborhood |
| BP | GO:0070838 | divalent metal ion transport | IEP | Neighborhood |
| BP | GO:0071214 | cellular response to abiotic stimulus | IEP | Neighborhood |
| BP | GO:0071478 | cellular response to radiation | IEP | Neighborhood |
| BP | GO:0071482 | cellular response to light stimulus | IEP | Neighborhood |
| BP | GO:0071483 | cellular response to blue light | IEP | Neighborhood |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Neighborhood |
| BP | GO:0072503 | cellular divalent inorganic cation homeostasis | IEP | Neighborhood |
| BP | GO:0072511 | divalent inorganic cation transport | IEP | Neighborhood |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| BP | GO:0090342 | regulation of cell aging | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
| BP | GO:0097468 | programmed cell death in response to reactive oxygen species | IEP | Neighborhood |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Neighborhood |
| BP | GO:0098657 | import into cell | IEP | Neighborhood |
| BP | GO:0104004 | cellular response to environmental stimulus | IEP | Neighborhood |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
| BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | Neighborhood |
| BP | GO:1901259 | chloroplast rRNA processing | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Neighborhood |
| BP | GO:1901657 | glycosyl compound metabolic process | IEP | Neighborhood |
| BP | GO:1901659 | glycosyl compound biosynthetic process | IEP | Neighborhood |
| BP | GO:1901917 | regulation of exoribonuclease activity | IEP | Neighborhood |
| BP | GO:1901918 | negative regulation of exoribonuclease activity | IEP | Neighborhood |
| BP | GO:1902680 | positive regulation of RNA biosynthetic process | IEP | Neighborhood |
| BP | GO:1903311 | regulation of mRNA metabolic process | IEP | Neighborhood |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Neighborhood |
| BP | GO:1903508 | positive regulation of nucleic acid-templated transcription | IEP | Neighborhood |
| BP | GO:1905392 | plant organ morphogenesis | IEP | Neighborhood |
| BP | GO:1905777 | regulation of exonuclease activity | IEP | Neighborhood |
| BP | GO:1905778 | negative regulation of exonuclease activity | IEP | Neighborhood |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Neighborhood |
