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  5. AT4G29980

AT4G29980


Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: Fasciclin-like arabinogalactan family protein (TAIR:AT1G30800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).


Gene families : OG0003434 (Archaeplastida) Phylogenetic Tree(s): OG0003434_tree ,
OG_05_0002387 (LandPlants) Phylogenetic Tree(s): OG_05_0002387_tree ,
OG_06_0010155 (SeedPlants) Phylogenetic Tree(s): OG_06_0010155_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G29980
Cluster HCCA: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
AT5G06920 FLA21 FASCICLIN-like arabinogalactan protein 21 precursor 0.03 Archaeplastida
Mp1g16270.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c13_8280V3.1 No alias Fasciclin-like arabinogalactan family protein 0.05 Archaeplastida
Pp3c1_4130V3.1 No alias FASCICLIN-like arabinogalactan protein 21 precursor 0.03 Archaeplastida
Pp3c26_11940V3.1 No alias Fasciclin-like arabinogalactan family protein 0.04 Archaeplastida
Pp3c3_3640V3.1 No alias Fasciclin-like arabinogalactan family protein 0.04 Archaeplastida
Pp3c6_3400V3.1 No alias Fasciclin-like arabinogalactan family protein 0.02 Archaeplastida
Solyc11g072680.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0004708 MAP kinase kinase activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0010022 meristem determinacy IEP Neighborhood
BP GO:0010582 floral meristem determinacy IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
BP GO:0019499 cyanide metabolic process IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0046202 cyanide biosynthetic process IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048654 anther morphogenesis IEP Neighborhood
BP GO:0048658 anther wall tapetum development IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0055046 microgametogenesis IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!