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  5. Pp3c24_2160V3.1

Pp3c24_2160V3.1


Description : 5\-3\ exoribonuclease 3


Gene families : OG0000811 (Archaeplastida) Phylogenetic Tree(s): OG0000811_tree ,
OG_05_0000830 (LandPlants) Phylogenetic Tree(s): OG_05_0000830_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c24_2160V3.1
Cluster HCCA: Cluster_293

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00046450 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.03 Archaeplastida
AMTR_s00025p00024460 evm_27.TU.AmTr_v1... 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00491p00000370 evm_27.TU.AmTr_v1... 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.05 Archaeplastida
AT1G54490 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease 4 0.02 Archaeplastida
Cpa|evm.model.tig00001164.8 No alias 5-3 exoribonuclease 2 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre16.g679900 No alias 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01009879001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 Archaeplastida
Gb_09607 No alias 5-3 exoribonuclease 3 OS=Arabidopsis thaliana... 0.06 Archaeplastida
LOC_Os01g65220.1 No alias exoribonuclease (RAT1/XRN2) 0.04 Archaeplastida
LOC_Os03g58060.1 No alias EBF-modulating exoribonuclease (EIN5/XRN4).... 0.02 Archaeplastida
MA_10016710g0020 No alias 5-3 exoribonuclease 3 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_10430844g0010 No alias exoribonuclease (RAT1/XRN2) 0.03 Archaeplastida
MA_141906g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp3g08820.1 No alias exoribonuclease (RAT1/XRN2) 0.05 Archaeplastida
Solyc04g049010.3.1 No alias EBF-modulating exoribonuclease (EIN5/XRN4).... 0.05 Archaeplastida
Solyc04g081280.3.1 No alias exoribonuclease (RAT1/XRN2) 0.04 Archaeplastida
Zm00001e011879_P001 No alias EBF-modulating exoribonuclease (EIN5/XRN4).... 0.06 Archaeplastida
Zm00001e021652_P001 No alias exoribonuclease (RAT1/XRN2) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!