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  5. Pp3c24_8560V3.1

Pp3c24_8560V3.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0023321 (LandPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c24_8560V3.1
Cluster HCCA: Cluster_191

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00263110 No alias Pentatricopeptide repeat-containing protein At1g03540... 0.04 Archaeplastida
AMTR_s00004p00076010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
AMTR_s00011p00266560 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
AMTR_s00025p00244370 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g05340... 0.02 Archaeplastida
AMTR_s00029p00204910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g19191,... 0.02 Archaeplastida
AMTR_s00032p00176600 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AMTR_s00049p00210350 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
AMTR_s00049p00223290 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
AMTR_s00056p00185560 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
AMTR_s00062p00213230 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
AMTR_s00063p00172440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
AMTR_s00066p00131520 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
AMTR_s00077p00031710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
AMTR_s00111p00107400 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
AMTR_s00122p00115170 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00130p00019530 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
AMTR_s00147p00097570 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
AMTR_s00170p00032020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16860... 0.03 Archaeplastida
AMTR_s02193p00008230 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g02330,... 0.03 Archaeplastida
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 Archaeplastida
AT2G02980 OTP85 Pentatricopeptide repeat (PPR) superfamily protein 0.08 Archaeplastida
AT2G46050 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Archaeplastida
AT3G22150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
AT3G29230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT4G18750 DOT4 Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT4G39530 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT5G48910 LPA66 Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT5G55740 CRR21 Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
Cpa|evm.model.tig00001038.5 No alias No description available 0.02 Archaeplastida
Cre08.g358250 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.02 Archaeplastida
GSVIVT01000178001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01005260001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.02 Archaeplastida
GSVIVT01008965001 No alias Pentatricopeptide repeat-containing protein At4g18520,... 0.04 Archaeplastida
GSVIVT01009227001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
GSVIVT01009407001 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
GSVIVT01009789001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.03 Archaeplastida
GSVIVT01011479001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.06 Archaeplastida
GSVIVT01012201001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
GSVIVT01012461001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
GSVIVT01015233001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
GSVIVT01017365001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
GSVIVT01017823001 No alias Pentatricopeptide repeat-containing protein At2g36980,... 0.02 Archaeplastida
GSVIVT01020091001 No alias RNA processing.organelle machineries.RNA... 0.07 Archaeplastida
GSVIVT01021756001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.05 Archaeplastida
GSVIVT01023971001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.08 Archaeplastida
GSVIVT01025295001 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.03 Archaeplastida
GSVIVT01026181001 No alias Pentatricopeptide repeat-containing protein At5g08305... 0.04 Archaeplastida
GSVIVT01027077001 No alias RNA processing.organelle machineries.RNA... 0.06 Archaeplastida
GSVIVT01028819001 No alias Pentatricopeptide repeat-containing protein At5g52850,... 0.03 Archaeplastida
GSVIVT01032721001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.04 Archaeplastida
GSVIVT01033389001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
GSVIVT01036142001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.06 Archaeplastida
GSVIVT01036169001 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
GSVIVT01036975001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
Gb_00259 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
Gb_00776 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.04 Archaeplastida
Gb_02808 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Gb_02911 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
Gb_03578 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Gb_04080 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Gb_06185 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
Gb_11688 No alias OTP70 plastidial RNA splicing factor 0.03 Archaeplastida
Gb_12722 No alias RNA editing factor (MEF9) 0.02 Archaeplastida
Gb_14323 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
Gb_14324 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_14867 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_16448 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida
Gb_17294 No alias RNA editing factor (MEF3) 0.03 Archaeplastida
Gb_20547 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
Gb_21443 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.04 Archaeplastida
Gb_21555 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Gb_21567 No alias RNA editing factor (MEF19) 0.02 Archaeplastida
Gb_21714 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Gb_22613 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
Gb_23126 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Gb_23678 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Gb_24674 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Gb_24823 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Gb_25029 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
Gb_25129 No alias RNA editing factor (ECD1) 0.04 Archaeplastida
Gb_26155 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.02 Archaeplastida
Gb_26526 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
Gb_29557 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
Gb_30096 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
Gb_32017 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Gb_32439 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_33210 No alias RNA editing factor (OTP82) 0.02 Archaeplastida
Gb_36806 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 Archaeplastida
Gb_39560 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
LOC_Os01g10800.1 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
LOC_Os01g41650.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
LOC_Os01g62910.1 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.05 Archaeplastida
LOC_Os02g50280.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
LOC_Os03g04390.1 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.04 Archaeplastida
LOC_Os03g44210.2 No alias RNA editing factor (SEL1/PDM1) 0.03 Archaeplastida
LOC_Os03g58100.1 No alias RNA editing factor (OTP85) 0.03 Archaeplastida
LOC_Os03g59264.1 No alias lectin chaperone (CRT) 0.06 Archaeplastida
LOC_Os04g39410.1 No alias RNA editing factor (OTP86) 0.05 Archaeplastida
LOC_Os04g51350.1 No alias RNA editing factor (AEF1) 0.02 Archaeplastida
LOC_Os05g12130.1 No alias RNA editing factor (ECD1) 0.07 Archaeplastida
LOC_Os05g49920.1 No alias RNA editing factor (ECB2/VAC1) 0.05 Archaeplastida
LOC_Os05g50950.1 No alias Pentatricopeptide repeat-containing protein At4g01030,... 0.04 Archaeplastida
LOC_Os07g02280.1 No alias RNA editing factor (OTP80) 0.04 Archaeplastida
LOC_Os07g07620.1 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.02 Archaeplastida
LOC_Os08g38610.1 No alias Pentatricopeptide repeat-containing protein At1g26900,... 0.02 Archaeplastida
LOC_Os10g33730.1 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
LOC_Os11g45410.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
LOC_Os12g30620.1 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.03 Archaeplastida
MA_10164206g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_10426444g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_10431227g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.06 Archaeplastida
MA_11074g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
MA_123466g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
MA_135075g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
MA_17949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_18165g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_20622g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_20746g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_265921g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_30949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_31170g0010 No alias RNA editing factor (MEF19) 0.05 Archaeplastida
MA_381817g0020 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_38266g0010 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.02 Archaeplastida
MA_43615g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_4438g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_72886g0010 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.03 Archaeplastida
MA_89214g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_9258g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_9526611g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
Smo100125 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.02 Archaeplastida
Smo137632 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Smo47998 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.04 Archaeplastida
Smo82024 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Smo90123 No alias Pentatricopeptide repeat-containing protein At3g22690... 0.02 Archaeplastida
Smo95815 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.02 Archaeplastida
Smo98426 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Smo98955 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Solyc02g079260.2.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Solyc02g088470.1.1 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.06 Archaeplastida
Solyc04g076800.3.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Solyc05g006800.2.1 No alias Pentatricopeptide repeat-containing protein At1g59720,... 0.03 Archaeplastida
Solyc05g013200.1.1 No alias RNA editing factor (OTP85) 0.03 Archaeplastida
Solyc08g013850.1.1 No alias RNA editing factor (CRR21) 0.08 Archaeplastida
Solyc09g082450.1.1 No alias RNA editing factor (YS1) 0.03 Archaeplastida
Solyc11g017370.3.1 No alias RNA editing factor (AEF1) 0.04 Archaeplastida
Zm00001e000301_P001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.05 Archaeplastida
Zm00001e003605_P001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.07 Archaeplastida
Zm00001e007042_P001 No alias RNA editing factor (AEF1) 0.05 Archaeplastida
Zm00001e015440_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Zm00001e021457_P001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Zm00001e029186_P001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.07 Archaeplastida
Zm00001e031351_P001 No alias RNA editing factor (ECD1) 0.08 Archaeplastida
Zm00001e032499_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e039305_P001 No alias RNA editing factor (MEF13) 0.02 Archaeplastida
Zm00001e041048_P001 No alias RNA editing factor (OTP86) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!