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  5. Pp3c25_15080V3.1

Pp3c25_15080V3.1


Description : pectin methylesterase 31


Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0005471 (LandPlants) Phylogenetic Tree(s): OG_05_0005471_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c25_15080V3.1
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00092510 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01001327001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
MA_181657g0020 No alias pectin methylesterase 0.02 Archaeplastida
MA_28575g0010 No alias pectin methylesterase 0.05 Archaeplastida
Mp2g19430.1 No alias pectin methylesterase 0.03 Archaeplastida
Mp3g01170.1 No alias pectin methylesterase 0.02 Archaeplastida
Mp5g03920.1 No alias pectin methylesterase 0.05 Archaeplastida
Mp5g03930.1 No alias pectin methylesterase 0.05 Archaeplastida
Pp3c1_22810V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c1_6010V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Smo164202 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
Smo81583 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Solyc05g052110.3.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc09g091730.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Solyc10g083820.2.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e020795_P001 No alias pectin methylesterase 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP Neighborhood
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Neighborhood
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP Neighborhood
BP GO:0009112 nucleobase metabolic process IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP Neighborhood
BP GO:0046112 nucleobase biosynthetic process IEP Neighborhood
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!