AT1G19850 (MP, IAA24, ARF5)


Aliases : MP, IAA24, ARF5

Description : Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related


Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000516 (LandPlants) Phylogenetic Tree(s): OG_05_0000516_tree ,
OG_06_0000730 (SeedPlants) Phylogenetic Tree(s): OG_06_0000730_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G19850
Cluster HCCA: Cluster_190

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00157690 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.06 Archaeplastida
AT3G61830 ARF18 auxin response factor 18 0.06 Archaeplastida
GSVIVT01011008001 No alias RNA biosynthesis.transcriptional activation.B3... 0.06 Archaeplastida
GSVIVT01021552001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
Gb_39685 No alias transcription factor (ARF) 0.03 Archaeplastida
Gb_39686 No alias transcription factor (ARF) 0.03 Archaeplastida
Gb_39786 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os01g48060.1 No alias transcription factor (ARF) 0.05 Archaeplastida
LOC_Os04g43910.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os04g57610.1 No alias transcription factor (ARF) 0.07 Archaeplastida
LOC_Os10g33940.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os12g29520.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os12g41950.1 No alias transcription factor (ARF) 0.06 Archaeplastida
MA_10432580g0010 No alias transcription factor (ARF) 0.04 Archaeplastida
Mp1g12750.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Mp2g02890.1 No alias Auxin response factor 19 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Pp3c26_11550V3.1 No alias auxin response factor 6 0.03 Archaeplastida
Solyc04g081240.2.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Solyc07g016180.3.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Solyc07g042260.4.1 No alias transcription factor (ARF) 0.05 Archaeplastida
Solyc08g008380.4.1 No alias transcription factor (ARF) 0.05 Archaeplastida
Solyc11g069190.2.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Zm00001e003229_P002 No alias transcription factor (ARF) 0.07 Archaeplastida
Zm00001e006577_P003 No alias transcription factor (ARF) 0.07 Archaeplastida
Zm00001e012670_P001 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e013061_P001 No alias transcription factor (ARF) 0.02 Archaeplastida
Zm00001e014833_P002 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e015164_P002 No alias transcription factor (ARF) 0.02 Archaeplastida
Zm00001e016366_P002 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e018126_P002 No alias transcription factor (ARF) 0.06 Archaeplastida
Zm00001e021527_P006 No alias transcription factor (ARF) 0.02 Archaeplastida
Zm00001e028396_P001 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e030325_P003 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e041910_P003 No alias transcription factor (ARF) 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
MF GO:0003700 DNA-binding transcription factor activity TAS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006346 methylation-dependent chromatin silencing RCA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEP Interproscan
BP GO:0007155 cell adhesion RCA Interproscan
BP GO:0009733 response to auxin IEP Interproscan
BP GO:0009733 response to auxin RCA Interproscan
BP GO:0009741 response to brassinosteroid RCA Interproscan
BP GO:0009855 determination of bilateral symmetry RCA Interproscan
BP GO:0009886 post-embryonic animal morphogenesis RCA Interproscan
BP GO:0009887 animal organ morphogenesis RCA Interproscan
BP GO:0009908 flower development IGI Interproscan
BP GO:0009909 regulation of flower development RCA Interproscan
BP GO:0009942 longitudinal axis specification IMP Interproscan
BP GO:0009944 polarity specification of adaxial/abaxial axis RCA Interproscan
BP GO:0009965 leaf morphogenesis RCA Interproscan
BP GO:0010014 meristem initiation RCA Interproscan
BP GO:0010051 xylem and phloem pattern formation IMP Interproscan
BP GO:0010051 xylem and phloem pattern formation RCA Interproscan
BP GO:0010073 meristem maintenance RCA Interproscan
BP GO:0010090 trichome morphogenesis RCA Interproscan
BP GO:0010305 leaf vascular tissue pattern formation IGI Interproscan
CC GO:0016020 membrane IDA Interproscan
BP GO:0016246 RNA interference RCA Interproscan
BP GO:0031048 chromatin silencing by small RNA RCA Interproscan
MF GO:0042802 identical protein binding IPI Interproscan
MF GO:0044212 transcription regulatory region DNA binding IDA Interproscan
BP GO:0045010 actin nucleation RCA Interproscan
BP GO:0048364 root development IGI Interproscan
BP GO:0048439 flower morphogenesis RCA Interproscan
BP GO:0048481 plant ovule development RCA Interproscan
BP GO:0048507 meristem development IGI Interproscan
BP GO:0048507 meristem development RCA Interproscan
BP GO:0048519 negative regulation of biological process RCA Interproscan
BP GO:0048527 lateral root development RCA Interproscan
BP GO:0048765 root hair cell differentiation RCA Interproscan
BP GO:0051567 histone H3-K9 methylation RCA Interproscan
BP GO:0071555 cell wall organization RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0001708 cell fate specification IEP Neighborhood
BP GO:0002252 immune effector process IEP Neighborhood
BP GO:0002376 immune system process IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0007154 cell communication IEP Neighborhood
BP GO:0007267 cell-cell signaling IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
BP GO:0008356 asymmetric cell division IEP Neighborhood
BP GO:0008361 regulation of cell size IEP Neighborhood
MF GO:0008810 cellulase activity IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009607 response to biotic stimulus IEP Neighborhood
BP GO:0009615 response to virus IEP Neighborhood
BP GO:0009616 virus induced gene silencing IEP Neighborhood
BP GO:0010052 guard cell differentiation IEP Neighborhood
BP GO:0010058 regulation of atrichoblast fate specification IEP Neighborhood
BP GO:0010059 positive regulation of atrichoblast fate specification IEP Neighborhood
BP GO:0010061 regulation of trichoblast fate specification IEP Neighborhood
BP GO:0010063 positive regulation of trichoblast fate specification IEP Neighborhood
BP GO:0010071 root meristem specification IEP Neighborhood
BP GO:0010093 specification of floral organ identity IEP Neighborhood
BP GO:0010158 abaxial cell fate specification IEP Neighborhood
BP GO:0010160 formation of animal organ boundary IEP Neighborhood
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP Neighborhood
BP GO:0010358 leaf shaping IEP Neighborhood
BP GO:0010374 stomatal complex development IEP Neighborhood
BP GO:0010453 regulation of cell fate commitment IEP Neighborhood
BP GO:0010455 positive regulation of cell fate commitment IEP Neighborhood
BP GO:0010586 miRNA metabolic process IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0023052 signaling IEP Neighborhood
BP GO:0030422 production of siRNA involved in RNA interference IEP Neighborhood
BP GO:0031050 dsRNA fragmentation IEP Neighborhood
BP GO:0035019 somatic stem cell population maintenance IEP Neighborhood
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP Neighborhood
MF GO:0035198 miRNA binding IEP Neighborhood
BP GO:0035821 modification of morphology or physiology of other organism IEP Neighborhood
BP GO:0042127 regulation of cell proliferation IEP Neighborhood
BP GO:0042547 cell wall modification involved in multidimensional cell growth IEP Neighborhood
BP GO:0042659 regulation of cell fate specification IEP Neighborhood
BP GO:0042660 positive regulation of cell fate specification IEP Neighborhood
BP GO:0043207 response to external biotic stimulus IEP Neighborhood
BP GO:0044003 modification by symbiont of host morphology or physiology IEP Neighborhood
BP GO:0044419 interspecies interaction between organisms IEP Neighborhood
BP GO:0045597 positive regulation of cell differentiation IEP Neighborhood
BP GO:0048366 leaf development IEP Neighborhood
BP GO:0048437 floral organ development IEP Neighborhood
BP GO:0048440 carpel development IEP Neighborhood
BP GO:0048441 petal development IEP Neighborhood
BP GO:0048443 stamen development IEP Neighborhood
BP GO:0048449 floral organ formation IEP Neighborhood
BP GO:0048451 petal formation IEP Neighborhood
BP GO:0048453 sepal formation IEP Neighborhood
BP GO:0048509 regulation of meristem development IEP Neighborhood
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP Neighborhood
BP GO:0048827 phyllome development IEP Neighborhood
BP GO:0048859 formation of anatomical boundary IEP Neighborhood
BP GO:0051301 cell division IEP Neighborhood
BP GO:0051607 defense response to virus IEP Neighborhood
BP GO:0051701 interaction with host IEP Neighborhood
BP GO:0051707 response to other organism IEP Neighborhood
BP GO:0051817 modification of morphology or physiology of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052018 modulation by symbiont of RNA levels in host IEP Neighborhood
BP GO:0052249 modulation of RNA levels in other organism involved in symbiotic interaction IEP Neighborhood
MF GO:0061980 regulatory RNA binding IEP Neighborhood
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP Neighborhood
BP GO:0090421 embryonic meristem initiation IEP Neighborhood
BP GO:0090558 plant epidermis development IEP Neighborhood
BP GO:0090701 specification of plant organ identity IEP Neighborhood
BP GO:0098586 cellular response to virus IEP Neighborhood
BP GO:1902183 regulation of shoot apical meristem development IEP Neighborhood
BP GO:1903888 regulation of plant epidermal cell differentiation IEP Neighborhood
BP GO:1903890 positive regulation of plant epidermal cell differentiation IEP Neighborhood
BP GO:1905393 plant organ formation IEP Neighborhood
BP GO:1905421 regulation of plant organ morphogenesis IEP Neighborhood
BP GO:1905423 positive regulation of plant organ morphogenesis IEP Neighborhood
BP GO:2000067 regulation of root morphogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 158 259
IPR010525 Auxin_resp 284 367
IPR033389 AUX/IAA_dom 785 879
No external refs found!