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  5. Pp3c25_8610V3.1

Pp3c25_8610V3.1


Description : squamosa promoter binding protein-like 8


Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree ,
OG_05_0000092 (LandPlants) Phylogenetic Tree(s): OG_05_0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c25_8610V3.1
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00197010 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
AMTR_s00106p00142470 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
AMTR_s00106p00144050 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
AT1G02065 SPL8 squamosa promoter binding protein-like 8 0.02 Archaeplastida
AT1G20980 SPL1R2, ATSPL14,... squamosa promoter binding protein-like 14 0.03 Archaeplastida
AT1G27370 SPL10 squamosa promoter binding protein-like 10 0.02 Archaeplastida
GSVIVT01008556001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
GSVIVT01013452001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
GSVIVT01018205001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
Gb_03921 No alias transcription factor (SBP) 0.02 Archaeplastida
Gb_26600 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os02g04680.1 No alias transcription factor (SBP) 0.02 Archaeplastida
LOC_Os08g39890.1 No alias transcription factor (SBP) 0.02 Archaeplastida
LOC_Os08g41940.1 No alias transcription factor (SBP) 0.02 Archaeplastida
LOC_Os09g31438.1 No alias transcription factor (SBP) 0.02 Archaeplastida
Mp1g13640.1 No alias transcription factor (SBP) 0.02 Archaeplastida
Smo437670 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
Solyc05g015510.3.1 No alias transcription factor (SBP) 0.02 Archaeplastida
Solyc07g062980.4.1 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e011712_P002 No alias transcription factor (SBP) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!