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  5. Pp3c26_14400V3.1

Pp3c26_14400V3.1


Description : RNA helicase family protein


Gene families : OG0000373 (Archaeplastida) Phylogenetic Tree(s): OG0000373_tree ,
OG_05_0005088 (LandPlants) Phylogenetic Tree(s): OG_05_0005088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c26_14400V3.1
Cluster HCCA: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00115360 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00025p00230510 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 Archaeplastida
AMTR_s00028p00237040 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00032p00104970 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana 0.05 Archaeplastida
AT1G06670 NIH nuclear DEIH-boxhelicase 0.1 Archaeplastida
AT1G58060 No alias RNA helicase family protein 0.1 Archaeplastida
AT2G01130 No alias DEA(D/H)-box RNA helicase family protein 0.05 Archaeplastida
AT2G30800 HVT1, ATVT-1 helicase in vascular tissue and tapetum 0.03 Archaeplastida
AT5G04895 No alias DEA(D/H)-box RNA helicase family protein 0.03 Archaeplastida
Cpa|evm.model.tig00000786.1 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cpa|evm.model.tig00021094.26 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cre06.g266416 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 Archaeplastida
GSVIVT01011809001 No alias DExH-box ATP-dependent RNA helicase DExH5, mitochondrial... 0.02 Archaeplastida
GSVIVT01020822001 No alias DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01022608001 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01023271001 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.1 Archaeplastida
Gb_05411 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.07 Archaeplastida
Gb_13707 No alias DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.05 Archaeplastida
Gb_37230 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.01 Archaeplastida
Gb_40990 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os01g02884.1 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os01g56190.1 No alias DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os03g53760.1 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os04g35260.1 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.04 Archaeplastida
MA_10432575g0010 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.1 Archaeplastida
MA_10434659g0010 No alias DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.06 Archaeplastida
MA_10435499g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_109435g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_177779g0010 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.02 Archaeplastida
MA_291146g0010 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 Archaeplastida
MA_97917g0010 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.03 Archaeplastida
Mp5g09990.1 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.1 Archaeplastida
Pp3c17_19726V3.1 No alias RNA helicase family protein 0.02 Archaeplastida
Smo177444 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.03 Archaeplastida
Smo50132 No alias DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana 0.05 Archaeplastida
Solyc01g006710.4.1 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.03 Archaeplastida
Solyc01g006970.4.1 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.05 Archaeplastida
Solyc01g103690.4.1 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.08 Archaeplastida
Solyc07g044930.3.1 No alias DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.07 Archaeplastida
Zm00001e004608_P001 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.06 Archaeplastida
Zm00001e008090_P002 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 Archaeplastida
Zm00001e017082_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e028983_P004 No alias DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!