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  5. Pp3c2_1810V3.1

Pp3c2_1810V3.1


Description : Coatomer, beta\ subunit


Gene families : OG0002594 (Archaeplastida) Phylogenetic Tree(s): OG0002594_tree ,
OG_05_0002769 (LandPlants) Phylogenetic Tree(s): OG_05_0002769_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c2_1810V3.1
Cluster HCCA: Cluster_186

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00142p00013680 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.06 Archaeplastida
AT1G79990 No alias structural molecules 0.06 Archaeplastida
AT3G15980 No alias Coatomer, beta' subunit 0.06 Archaeplastida
Cpa|evm.model.tig00020903.33 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 Archaeplastida
Cre02.g118500 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.06 Archaeplastida
GSVIVT01017121001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.05 Archaeplastida
Gb_26317 No alias subunit beta2 of coat protein complex 0.05 Archaeplastida
LOC_Os02g11830.2 No alias subunit beta2 of coat protein complex 0.02 Archaeplastida
LOC_Os02g11840.1 No alias subunit beta2 of coat protein complex 0.02 Archaeplastida
MA_10436968g0010 No alias peroxisomal polyamine oxidase (PAO2/3/4). subunit beta2... 0.02 Archaeplastida
Mp3g04060.1 No alias subunit beta2 of coat protein complex 0.08 Archaeplastida
Solyc03g120270.4.1 No alias subunit beta2 of coat protein complex 0.08 Archaeplastida
Solyc06g066730.3.1 No alias subunit beta2 of coat protein complex 0.05 Archaeplastida
Solyc12g043000.3.1 No alias subunit beta2 of coat protein complex 0.06 Archaeplastida
Zm00001e014494_P001 No alias subunit beta2 of coat protein complex 0.09 Archaeplastida
Zm00001e024969_P001 No alias subunit beta2 of coat protein complex 0.08 Archaeplastida
Zm00001e030001_P002 No alias subunit beta2 of coat protein complex 0.06 Archaeplastida
Zm00001e036524_P002 No alias subunit beta2 of coat protein complex 0.04 Archaeplastida
Zm00001e037375_P002 No alias subunit beta2 of coat protein complex 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004576 oligosaccharyl transferase activity IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
InterPro domains Description Start Stop
IPR006692 Coatomer_WD-assoc_reg 319 763
IPR001680 WD40_repeat 91 127
IPR001680 WD40_repeat 134 171
IPR001680 WD40_repeat 220 256
IPR001680 WD40_repeat 59 85
IPR001680 WD40_repeat 177 215
No external refs found!