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  5. Pp3c2_22950V3.1

Pp3c2_22950V3.1


Description : zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein


Gene families : OG0003907 (Archaeplastida) Phylogenetic Tree(s): OG0003907_tree ,
OG_05_0003938 (LandPlants) Phylogenetic Tree(s): OG_05_0003938_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c2_22950V3.1
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
AT3G27700 No alias zinc finger (CCCH-type) family protein / RNA recognition... 0.02 Archaeplastida
GSVIVT01032423001 No alias Zinc finger CCCH domain-containing protein 41... 0.05 Archaeplastida
Gb_08836 No alias Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.02 Archaeplastida
Gb_29092 No alias Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.02 Archaeplastida
MA_255786g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp5g00230.1 No alias Zinc finger CCCH domain-containing protein 41... 0.03 Archaeplastida
Solyc12g035250.3.1 No alias Zinc finger CCCH domain-containing protein 41... 0.04 Archaeplastida
Zm00001e008334_P001 No alias Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 574 636
No external refs found!