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  5. Pp3c2_23477V3.1

Pp3c2_23477V3.1


Description : ribosomal protein L16


Gene families : OG0002172 (Archaeplastida) Phylogenetic Tree(s): OG0002172_tree ,
OG_05_0002418 (LandPlants) Phylogenetic Tree(s): OG_05_0002418_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c2_23477V3.1
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
ATCG00790 RPL16 ribosomal protein L16 0.06 Archaeplastida
ATMG00080 RPL16 ribosomal protein L16 0.03 Archaeplastida
Cre06.g278224 No alias 60S ribosomal protein L16, mitochondrial OS=Prototheca... 0.02 Archaeplastida
Gb_40955 No alias 50S ribosomal protein L16, chloroplastic... 0.04 Archaeplastida
LOC_Os01g57958.1 No alias 50S ribosomal protein L16, chloroplastic OS=Oryza nivara... 0.04 Archaeplastida
LOC_Os04g16826.1 No alias 50S ribosomal protein L16, chloroplastic OS=Oryza nivara... 0.04 Archaeplastida
LOC_Os10g21344.1 No alias 50S ribosomal protein L16, chloroplastic OS=Oryza nivara... 0.04 Archaeplastida
Mp1g22400.1 No alias 60S ribosomal protein L16, mitochondrial OS=Marchantia... 0.1 Archaeplastida
Mp6g01250.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Smo137887 No alias 50S ribosomal protein L16, chloroplastic OS=Huperzia lucidula 0.02 Archaeplastida
Solyc00g500032.1.1 No alias 50S ribosomal protein L16, chloroplastic OS=Atropa... 0.04 Archaeplastida
Solyc00g500077.1.1 No alias 50S ribosomal protein L16, chloroplastic OS=Atropa... 0.04 Archaeplastida
Solyc05g045840.1.1 No alias 60S ribosomal protein L16, mitochondrial OS=Arabidopsis... 0.04 Archaeplastida
Solyc09g015860.1.1 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006091 generation of precursor metabolites and energy IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
BP GO:0009767 photosynthetic electron transport chain IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015074 DNA integration IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016168 chlorophyll binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0019684 photosynthesis, light reaction IEP Neighborhood
BP GO:0022900 electron transport chain IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!