Pp3c2_2520V3.1

Description : DEAD box RNA helicase (RH3)

Gene families : OG0000607 (Archaeplastida) Phylogenetic Tree(s): OG0000607_tree ,
OG_05_0000974 (LandPlants) Phylogenetic Tree(s): OG_05_0000974_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c2_2520V3.1
Cluster	HCCA: Cluster_20

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00168720	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.1	Archaeplastida
AMTR_s00126p00110160	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.09	Archaeplastida
AT5G26742	emb1138	DEAD box RNA helicase (RH3)	0.15	Archaeplastida
Cre17.g727700	No alias	DEAD-box ATP-dependent RNA helicase 3, chloroplastic...	0.03	Archaeplastida
GSVIVT01031360001	No alias	RNA processing.organelle machineries.RNA...	0.12	Archaeplastida
Gb_04849	No alias	RH3 plastidial RNA basal splicing factor	0.07	Archaeplastida
Gb_35745	No alias	RH3 plastidial RNA basal splicing factor	0.06	Archaeplastida
LOC_Os03g61220.1	No alias	RH3 plastidial RNA basal splicing factor	0.05	Archaeplastida
Mp3g17170.1	No alias	RH3 plastidial RNA basal splicing factor. RNA helicase (PMH)	0.09	Archaeplastida
Smo10677	No alias	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
Solyc08g042050.3.1	No alias	RH3 plastidial RNA basal splicing factor	0.06	Archaeplastida
Zm00001e006243_P001	No alias	RH3 plastidial RNA basal splicing factor	0.05	Archaeplastida
Zm00001e011716_P001	No alias	RH3 plastidial RNA basal splicing factor	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	374	480
IPR012562	GUCT	567	665
IPR011545	DEAD/DEAH_box_helicase_dom	161	335
IPR001878	Znf_CCHC	811	828

External Links

No external refs found!

Pp3c2_2520V3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation