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  5. Pp3c2_27130V3.1

Pp3c2_27130V3.1


Description : RNA helicase family protein


Gene families : OG0000159 (Archaeplastida) Phylogenetic Tree(s): OG0000159_tree ,
OG_05_0004210 (LandPlants) Phylogenetic Tree(s): OG_05_0004210_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c2_27130V3.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00074370 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
AMTR_s00090p00083520 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.03 Archaeplastida
AT1G26370 No alias RNA helicase family protein 0.02 Archaeplastida
AT1G27900 No alias RNA helicase family protein 0.03 Archaeplastida
AT2G35340 MEE29 helicase domain-containing protein 0.05 Archaeplastida
AT3G26560 No alias ATP-dependent RNA helicase, putative 0.04 Archaeplastida
AT4G01020 No alias helicase domain-containing protein / IBR... 0.03 Archaeplastida
AT5G10370 No alias helicase domain-containing protein / IBR... 0.02 Archaeplastida
Cpa|evm.model.tig00000842.2 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 Archaeplastida
Cpa|evm.model.tig00020531.53 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.01 Archaeplastida
Cre07.g349100 No alias RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
Cre08.g358563 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
GSVIVT01003434001 No alias ATP-dependent RNA helicase DEAH11, chloroplastic... 0.03 Archaeplastida
GSVIVT01007911001 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 Archaeplastida
GSVIVT01029863001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
Gb_11931 No alias RNA helicase (Prp22) 0.04 Archaeplastida
Gb_13411 No alias RNA helicase (Prp16) 0.02 Archaeplastida
Gb_14270 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Gb_30670 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Archaeplastida
LOC_Os01g11370.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
LOC_Os06g09280.1 No alias RNA helicase (Prp22) 0.02 Archaeplastida
LOC_Os08g24760.1 No alias RNA helicase (Prp2) 0.02 Archaeplastida
LOC_Os11g20554.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
MA_10436572g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_277016g0010 No alias RNA helicase (Prp2) 0.02 Archaeplastida
MA_5383g0010 No alias RNA helicase (Prp16) 0.02 Archaeplastida
MA_8723931g0010 No alias RNA helicase (Prp16) 0.02 Archaeplastida
Mp2g13680.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida
Mp7g03460.1 No alias RNA helicase (Prp16) 0.05 Archaeplastida
Solyc03g115390.4.1 No alias RNA helicase (Prp2) 0.03 Archaeplastida
Solyc07g039550.4.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
Solyc10g076910.2.1 No alias RNA helicase (Prp16) 0.04 Archaeplastida
Zm00001e001487_P003 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.04 Archaeplastida
Zm00001e014112_P001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
Zm00001e022095_P001 No alias RNA helicase (Prp2) 0.04 Archaeplastida
Zm00001e035576_P001 No alias E3 ubiquitin ligase (RBR-Helicase) 0.02 Archaeplastida
Zm00001e036358_P005 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Zm00001e038305_P001 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
MF GO:0061608 nuclear import signal receptor activity IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!