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  5. Pp3c2_28380V3.1

Pp3c2_28380V3.1


Description : NOP56-like pre RNA processing ribonucleoprotein


Gene families : OG0003184 (Archaeplastida) Phylogenetic Tree(s): OG0003184_tree ,
OG_05_0003241 (LandPlants) Phylogenetic Tree(s): OG_05_0003241_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c2_28380V3.1
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00260990 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.02 Archaeplastida
AT3G05060 No alias NOP56-like pre RNA processing ribonucleoprotein 0.08 Archaeplastida
AT5G27120 No alias NOP56-like pre RNA processing ribonucleoprotein 0.09 Archaeplastida
Cpa|evm.model.tig00021350.31 No alias RNA processing.RNA modification.rRNA/tRNA... 0.04 Archaeplastida
Cre10.g441400 No alias RNA processing.RNA modification.rRNA/tRNA... 0.05 Archaeplastida
GSVIVT01021905001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.09 Archaeplastida
Gb_26926 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.05 Archaeplastida
LOC_Os03g22730.1 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.03 Archaeplastida
MA_10431466g0010 No alias No annotation 0.05 Archaeplastida
Mp2g00370.1 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.06 Archaeplastida
Smo146841 No alias RNA processing.RNA modification.rRNA/tRNA... 0.03 Archaeplastida
Solyc09g083080.4.1 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.09 Archaeplastida
Zm00001e001659_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e038207_P001 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!