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  5. Pp3c2_31580V3.1

Pp3c2_31580V3.1


Description : CONSTANS-like 4


Gene families : OG0000859 (Archaeplastida) Phylogenetic Tree(s): OG0000859_tree ,
OG_05_0001138 (LandPlants) Phylogenetic Tree(s): OG_05_0001138_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c2_31580V3.1
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00192190 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
AT3G02380 COL2, ATCOL2 CONSTANS-like 2 0.04 Archaeplastida
AT5G15850 COL1, ATCOL1 CONSTANS-like 1 0.03 Archaeplastida
AT5G57660 ATCOL5, COL5 CONSTANS-like 5 0.03 Archaeplastida
Cpa|evm.model.tig00001024.14 No alias No description available 0.02 Archaeplastida
GSVIVT01036037001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
LOC_Os02g39710.1 No alias transcription factor (BBX-CO) 0.04 Archaeplastida
Mp8g13470.1 No alias transcription factor (BBX-CO) 0.04 Archaeplastida
Smo102790 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 Archaeplastida
Smo102902 No alias Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana 0.02 Archaeplastida
Smo185898 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 Archaeplastida
Solyc07g006630.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc12g096500.2.1 No alias transcription factor (BBX-CO) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!