1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c2_36480V3.1

Pp3c2_36480V3.1


Description : photosystem II light harvesting complex gene 2.1


Gene families : OG0000035 (Archaeplastida) Phylogenetic Tree(s): OG0000035_tree ,
OG_05_0000162 (LandPlants) Phylogenetic Tree(s): OG_05_0000162_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c2_36480V3.1
Cluster HCCA: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00112770 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
AT1G15820 CP24, LHCB6 light harvesting complex photosystem II subunit 6 0.04 Archaeplastida
AT1G29930 LHCB1.3, CAB140,... chlorophyll A/B binding protein 1 0.03 Archaeplastida
AT1G61520 LHCA3 photosystem I light harvesting complex gene 3 0.03 Archaeplastida
AT2G05070 LHCB2.2, LHCB2 photosystem II light harvesting complex gene 2.2 0.03 Archaeplastida
AT2G05100 LHCB2.1, LHCB2 photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
AT2G34420 LHCB1.5, LHB1B2 photosystem II light harvesting complex gene B1B2 0.04 Archaeplastida
AT3G08940 LHCB4.2 light harvesting complex photosystem II 0.02 Archaeplastida
AT3G47470 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 0.03 Archaeplastida
AT3G54890 LHCA1 photosystem I light harvesting complex gene 1 0.03 Archaeplastida
AT3G61470 LHCA2 photosystem I light harvesting complex gene 2 0.02 Archaeplastida
AT5G01530 LHCB4.1 light harvesting complex photosystem II 0.03 Archaeplastida
AT5G54270 LHCB3*1, LHCB3 light-harvesting chlorophyll B-binding protein 3 0.03 Archaeplastida
Cre01.g066917 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Cre03.g156900 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Cre04.g232104 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Cre06.g272650 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 Archaeplastida
Cre06.g278213 No alias Chlorophyll a-b binding protein P4, chloroplastic... 0.03 Archaeplastida
Cre06.g283050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 Archaeplastida
Cre06.g283950 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Cre06.g285250 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre07.g344950 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.04 Archaeplastida
Cre10.g425900 No alias Chlorophyll a-b binding protein 4, chloroplastic... 0.03 Archaeplastida
Cre10.g452050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Cre11.g467573 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 Archaeplastida
Cre12.g508750 No alias Photosystem I chlorophyll a/b-binding protein 6,... 0.04 Archaeplastida
Cre12.g548400 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Cre12.g548950 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre16.g673650 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Cre16.g687900 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 Archaeplastida
Cre17.g720250 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
GSVIVT01019377001 No alias Photosystem I chlorophyll a/b-binding protein 3-1,... 0.01 Archaeplastida
Gb_10163 No alias component LHCa3 of LHC-I complex 0.01 Archaeplastida
Gb_18375 No alias component LHCa1 of LHC-I complex 0.02 Archaeplastida
Gb_25594 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.01 Archaeplastida
Gb_32082 No alias component LHCa2 of LHC-I complex 0.02 Archaeplastida
LOC_Os06g21590.1 No alias component LHCa1 of LHC-I complex 0.01 Archaeplastida
LOC_Os07g37240.1 No alias component LHCb4 of LHC-II complex 0.01 Archaeplastida
LOC_Os07g38960.1 No alias component LHCa2 of LHC-I complex 0.02 Archaeplastida
MA_10431493g0010 No alias component LHCa1 of LHC-I complex 0.01 Archaeplastida
MA_129206g0010 No alias component LHCb4 of LHC-II complex 0.02 Archaeplastida
MA_176279g0010 No alias component LHCb5 of LHC-II complex 0.01 Archaeplastida
MA_18273g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_267089g0010 No alias Chlorophyll a-b binding protein type I, chloroplastic... 0.03 Archaeplastida
MA_65346g0010 No alias Chlorophyll a-b binding protein P4, chloroplastic... 0.01 Archaeplastida
MA_815900g0010 No alias component LHCa3 of LHC-I complex 0.01 Archaeplastida
Mp1g16850.1 No alias component LHCb4 of LHC-II complex 0.01 Archaeplastida
Mp2g15420.1 No alias component LHCa1 of LHC-I complex 0.02 Archaeplastida
Mp3g07840.1 No alias component LHCa4 of LHC-I complex 0.02 Archaeplastida
Mp4g00930.1 No alias component LHCa3 of LHC-I complex 0.02 Archaeplastida
Mp4g10900.1 No alias component LHCb5 of LHC-II complex 0.01 Archaeplastida
Mp6g01650.1 No alias component LHCb6 of LHC-II complex 0.02 Archaeplastida
Mp7g05880.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Mp7g06760.1 No alias component LHCb1/2/3 of LHC-II complex 0.01 Archaeplastida
Mp7g06780.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Mp8g13180.1 No alias component LHCa2 of LHC-I complex 0.01 Archaeplastida
Pp3c12_19200V3.1 No alias photosystem I light harvesting complex gene 2 0.01 Archaeplastida
Pp3c12_25460V3.1 No alias light harvesting complex photosystem II 0.04 Archaeplastida
Pp3c16_16040V3.1 No alias photosystem I light harvesting complex gene 3 0.02 Archaeplastida
Pp3c18_8100V3.1 No alias photosystem II light harvesting complex gene 2.1 0.08 Archaeplastida
Pp3c21_3950V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c4_5690V3.1 No alias light harvesting complex photosystem II 0.03 Archaeplastida
Smo446130 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Smo75552 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Solyc03g115900.4.1 No alias component LHCa4 of LHC-I complex 0.03 Archaeplastida
Solyc05g056050.3.1 No alias component LHCa1 of LHC-I complex 0.03 Archaeplastida
Solyc06g063370.3.1 No alias component LHCb5 of LHC-II complex 0.02 Archaeplastida
Solyc07g047850.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Solyc09g014520.3.1 No alias component LHCb4 of LHC-II complex 0.02 Archaeplastida
Solyc10g006230.3.1 No alias component LHCa2 of LHC-I complex 0.02 Archaeplastida
Solyc12g011450.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Zm00001e013742_P001 No alias component LHCa1 of LHC-I complex 0.01 Archaeplastida
Zm00001e022453_P001 No alias component LHCa4 of LHC-I complex 0.02 Archaeplastida
Zm00001e033739_P001 No alias component LHCq of LHC-II complex 0.01 Archaeplastida
Zm00001e035349_P002 No alias component LHCa2 of LHC-I complex 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
CC GO:0034357 photosynthetic membrane IEP Neighborhood
CC GO:0042651 thylakoid membrane IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!