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  5. Pp3c2_5110V3.1

Pp3c2_5110V3.1


Description : RNApolymerase sigma subunit 2


Gene families : OG0000365 (Archaeplastida) Phylogenetic Tree(s): OG0000365_tree ,
OG_05_0001853 (LandPlants) Phylogenetic Tree(s): OG_05_0001853_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c2_5110V3.1
Cluster HCCA: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00015p00252960 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.01 Archaeplastida
AMTR_s00056p00209700 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.02 Archaeplastida
AT3G53920 SIGC, SIG3 RNApolymerase sigma-subunit C 0.02 Archaeplastida
AT5G24120 ATSIG5, SIG5, SIGE sigma factor E 0.03 Archaeplastida
GSVIVT01032193001 No alias RNA biosynthesis.organelle... 0.01 Archaeplastida
LOC_Os03g16430.1 No alias basal transcription factor (Sigma) 0.02 Archaeplastida
LOC_Os05g50930.1 No alias basal transcription factor (Sigma) 0.01 Archaeplastida
LOC_Os08g06630.1 No alias basal transcription factor (Sigma) 0.02 Archaeplastida
MA_137876g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c22_18520V3.1 No alias sigma factor E 0.04 Archaeplastida
Smo147096 No alias RNA biosynthesis.organelle... 0.01 Archaeplastida
Solyc03g007370.3.1 No alias basal transcription factor (Sigma) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

No external refs found!