AT4G33880 (RSL2)


Aliases : RSL2

Description : ROOT HAIR DEFECTIVE 6-LIKE 2


Gene families : OG0000092 (Archaeplastida) Phylogenetic Tree(s): OG0000092_tree ,
OG_05_0000040 (LandPlants) Phylogenetic Tree(s): OG_05_0000040_tree ,
OG_06_0000031 (SeedPlants) Phylogenetic Tree(s): OG_06_0000031_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G33880
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00183410 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
AT1G09530 PIF3, POC1, PAP3 phytochrome interacting factor 3 0.05 Archaeplastida
AT1G66470 RHD6 ROOT HAIR DEFECTIVE6 0.07 Archaeplastida
AT2G46970 PIL1 phytochrome interacting factor 3-like 1 0.06 Archaeplastida
AT3G21330 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.05 Archaeplastida
AT3G50330 HEC2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.06 Archaeplastida
AT5G37800 ATRSL1, RSL1 RHD SIX-LIKE 1 0.05 Archaeplastida
AT5G61270 PIF7 phytochrome-interacting factor7 0.03 Archaeplastida
AT5G67060 HEC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.05 Archaeplastida
GSVIVT01009479001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
GSVIVT01026516001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 Archaeplastida
Gb_30839 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os01g02110.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os03g10770.1 No alias transcription factor (bHLH) 0.07 Archaeplastida
LOC_Os06g06900.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os07g39940.1 No alias transcription factor (bHLH) 0.09 Archaeplastida
LOC_Os09g28210.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os11g41640.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
LOC_Os12g32400.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os12g39850.1 No alias transcription factor (bHLH) 0.05 Archaeplastida
MA_10156436g0010 No alias transcription factor (bHLH) 0.03 Archaeplastida
MA_83500g0010 No alias transcription factor (bHLH) 0.04 Archaeplastida
MA_88831g0010 No alias transcription factor (bHLH) 0.02 Archaeplastida
Mp1g01110.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Mp3g17350.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Mp5g09710.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Mp6g21470.1 No alias transcription factor (bHLH) 0.05 Archaeplastida
Pp3c16_21590V3.1 No alias ROOT HAIR DEFECTIVE 6-LIKE 2 0.06 Archaeplastida
Smo409967 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 Archaeplastida
Smo413232 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
Smo418491 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
Solyc01g107140.3.1 No alias transcription factor (bHLH) 0.07 Archaeplastida
Solyc02g091440.2.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Solyc03g044460.1.1 No alias transcription factor (bHLH) 0.05 Archaeplastida
Solyc04g077960.1.1 No alias transcription factor (bHLH) 0.1 Archaeplastida
Solyc04g078790.3.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Solyc09g005070.1.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Solyc12g088380.1.1 No alias transcription factor (bHLH) 0.06 Archaeplastida
Zm00001e015610_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e027758_P002 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e035422_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e038765_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006355 regulation of transcription, DNA-templated TAS Interproscan
BP GO:0009733 response to auxin IEP Interproscan
BP GO:0016049 cell growth IMP Interproscan
BP GO:0048766 root hair initiation IMP Interproscan
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
MF GO:0000104 succinate dehydrogenase activity IEP Neighborhood
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005548 phospholipid transporter activity IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) IEP Neighborhood
CC GO:0005794 Golgi apparatus IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006121 mitochondrial electron transport, succinate to ubiquinone IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0006826 iron ion transport IEP Neighborhood
BP GO:0007154 cell communication IEP Neighborhood
MF GO:0008417 fucosyltransferase activity IEP Neighborhood
MF GO:0008493 tetracycline transmembrane transporter activity IEP Neighborhood
MF GO:0008526 phosphatidylinositol transporter activity IEP Neighborhood
BP GO:0009267 cellular response to starvation IEP Neighborhood
CC GO:0009531 secondary cell wall IEP Neighborhood
BP GO:0009808 lignin metabolic process IEP Neighborhood
BP GO:0009991 response to extracellular stimulus IEP Neighborhood
BP GO:0010053 root epidermal cell differentiation IEP Neighborhood
BP GO:0010054 trichoblast differentiation IEP Neighborhood
BP GO:0010106 cellular response to iron ion starvation IEP Neighborhood
BP GO:0010167 response to nitrate IEP Neighborhood
BP GO:0010383 cell wall polysaccharide metabolic process IEP Neighborhood
BP GO:0010410 hemicellulose metabolic process IEP Neighborhood
BP GO:0010413 glucuronoxylan metabolic process IEP Neighborhood
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
MF GO:0015665 alcohol transmembrane transporter activity IEP Neighborhood
BP GO:0015698 inorganic anion transport IEP Neighborhood
BP GO:0015706 nitrate transport IEP Neighborhood
BP GO:0016128 phytosteroid metabolic process IEP Neighborhood
BP GO:0016129 phytosteroid biosynthetic process IEP Neighborhood
BP GO:0016131 brassinosteroid metabolic process IEP Neighborhood
BP GO:0016132 brassinosteroid biosynthetic process IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
MF GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity IEP Neighborhood
CC GO:0016324 apical plasma membrane IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
BP GO:0021700 developmental maturation IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
BP GO:0030154 cell differentiation IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
BP GO:0031667 response to nutrient levels IEP Neighborhood
BP GO:0031668 cellular response to extracellular stimulus IEP Neighborhood
BP GO:0031669 cellular response to nutrient levels IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0042594 response to starvation IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
MF GO:0042895 antibiotic transmembrane transporter activity IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
BP GO:0044038 cell wall macromolecule biosynthetic process IEP Neighborhood
CC GO:0045257 succinate dehydrogenase complex (ubiquinone) IEP Neighborhood
CC GO:0045281 succinate dehydrogenase complex IEP Neighborhood
CC GO:0045283 fumarate reductase complex IEP Neighborhood
BP GO:0045491 xylan metabolic process IEP Neighborhood
BP GO:0045492 xylan biosynthetic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
MF GO:0047209 coniferyl-alcohol glucosyltransferase activity IEP Neighborhood
BP GO:0048469 cell maturation IEP Neighborhood
BP GO:0048588 developmental cell growth IEP Neighborhood
BP GO:0048589 developmental growth IEP Neighborhood
BP GO:0048764 trichoblast maturation IEP Neighborhood
BP GO:0048765 root hair cell differentiation IEP Neighborhood
BP GO:0048767 root hair elongation IEP Neighborhood
BP GO:0048768 root hair cell tip growth IEP Neighborhood
BP GO:0060560 developmental growth involved in morphogenesis IEP Neighborhood
BP GO:0070589 cellular component macromolecule biosynthetic process IEP Neighborhood
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP Neighborhood
BP GO:0071496 cellular response to external stimulus IEP Neighborhood
BP GO:0071695 anatomical structure maturation IEP Neighborhood
MF GO:0080044 quercetin 7-O-glucosyltransferase activity IEP Neighborhood
MF GO:0080045 quercetin 3'-O-glucosyltransferase activity IEP Neighborhood
BP GO:0090627 plant epidermal cell differentiation IEP Neighborhood
MF GO:1901618 organic hydroxy compound transmembrane transporter activity IEP Neighborhood
BP GO:1901698 response to nitrogen compound IEP Neighborhood
BP GO:1903338 regulation of cell wall organization or biogenesis IEP Neighborhood
BP GO:2000652 regulation of secondary cell wall biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR011598 bHLH_dom 282 322
No external refs found!