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  5. Pp3c2_9850V3.1

Pp3c2_9850V3.1


Description : U5 small nuclear ribonucleoprotein helicase


Gene families : OG0000989 (Archaeplastida) Phylogenetic Tree(s): OG0000989_tree ,
OG_05_0001451 (LandPlants) Phylogenetic Tree(s): OG_05_0001451_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c2_9850V3.1
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00114710 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.04 Archaeplastida
AMTR_s00077p00041320 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH12... 0.02 Archaeplastida
AMTR_s00110p00146400 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH14... 0.07 Archaeplastida
AT1G20960 emb1507 U5 small nuclear ribonucleoprotein helicase, putative 0.02 Archaeplastida
AT5G61140 No alias U5 small nuclear ribonucleoprotein helicase 0.07 Archaeplastida
Cpa|evm.model.tig00000865.27 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.03 Archaeplastida
Cre17.g744147 No alias RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
GSVIVT01007875001 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.07 Archaeplastida
GSVIVT01010769001 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.06 Archaeplastida
Gb_18049 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.07 Archaeplastida
Gb_27895 No alias RNA helicase (Brr2) 0.05 Archaeplastida
LOC_Os02g01740.1 No alias RNA helicase (Brr2) 0.02 Archaeplastida
LOC_Os03g11470.1 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.07 Archaeplastida
MA_10429486g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.05 Archaeplastida
MA_10434882g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.04 Archaeplastida
MA_81219g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_81219g0020 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.09 Archaeplastida
MA_81219g0030 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.05 Archaeplastida
MA_823844g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.04 Archaeplastida
MA_930633g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.04 Archaeplastida
Mp1g06890.1 No alias RNA helicase (Brr2) 0.02 Archaeplastida
Mp7g00250.1 No alias RNA helicase (Brr2) 0.07 Archaeplastida
Smo144158 No alias RNA processing.RNA splicing.spliceosome... 0.04 Archaeplastida
Smo178863 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.03 Archaeplastida
Smo410613 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.04 Archaeplastida
Solyc06g069480.3.1 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.05 Archaeplastida
Zm00001e035676_P001 No alias RNA helicase (Brr2) 0.03 Archaeplastida
Zm00001e038727_P001 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!