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  5. Pp3c3_10580V3.1

Pp3c3_10580V3.1


Description : ARM repeat superfamily protein


Gene families : OG0003059 (Archaeplastida) Phylogenetic Tree(s): OG0003059_tree ,
OG_05_0005928 (LandPlants) Phylogenetic Tree(s): OG_05_0005928_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c3_10580V3.1
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00089410 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 Archaeplastida
AT3G06530 No alias ARM repeat superfamily protein 0.17 Archaeplastida
Cpa|evm.model.tig00000074.2 No alias Uncharacterized protein At3g06530 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cre12.g548000 No alias Uncharacterized protein At3g06530 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01013976001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 Archaeplastida
Gb_31968 No alias Uncharacterized protein At3g06530 OS=Arabidopsis... 0.03 Archaeplastida
Gb_31970 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_31975 No alias SSU processome assembly factor (UTP10) 0.02 Archaeplastida
LOC_Os04g46310.1 No alias SSU processome assembly factor (UTP10) 0.15 Archaeplastida
MA_10133755g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_10431774g0010 No alias No annotation 0.07 Archaeplastida
MA_10431891g0010 No alias Uncharacterized protein At3g06530 OS=Arabidopsis... 0.04 Archaeplastida
MA_735g0010 No alias Uncharacterized protein At3g06530 OS=Arabidopsis... 0.07 Archaeplastida
Mp1g06160.1 No alias SSU processome assembly factor (UTP10) 0.12 Archaeplastida
Smo438493 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 Archaeplastida
Solyc03g093480.3.1 No alias SSU processome assembly factor (UTP10) 0.17 Archaeplastida
Zm00001e016831_P001 No alias SSU processome assembly factor (UTP10) 0.13 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!