1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c3_18310V3.1

Pp3c3_18310V3.1


Description : 3\-5\-exoribonuclease family protein


Gene families : OG0001779 (Archaeplastida) Phylogenetic Tree(s): OG0001779_tree ,
OG_05_0007636 (LandPlants) Phylogenetic Tree(s): OG_05_0007636_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c3_18310V3.1
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
AT3G61620 RRP41 3'-5'-exoribonuclease family protein 0.04 Archaeplastida
GSVIVT01027043001 No alias RNA processing.RNA decay.exosome complex.EXO9 core... 0.02 Archaeplastida
LOC_Os03g62720.1 No alias component MTR3/RRP41L of exosome EXO9 core complex 0.02 Archaeplastida
MA_128453g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp2g19580.1 No alias component MTR3/RRP41L of exosome EXO9 core complex 0.03 Archaeplastida
Solyc01g095480.4.1 No alias component RRP41 of exosome EXO9 core complex 0.02 Archaeplastida
Solyc06g005860.3.1 No alias component MTR3/RRP41L of exosome EXO9 core complex 0.02 Archaeplastida
Zm00001e026496_P002 No alias component RRP41 of exosome EXO9 core complex 0.02 Archaeplastida
Zm00001e035628_P002 No alias component MTR3/RRP41L of exosome EXO9 core complex 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR015847 ExoRNase_PH_dom2 178 242
IPR001247 ExoRNase_PH_dom1 47 174
No external refs found!