Pp3c3_23250V3.1

Description : pescadillo-related

Gene families : OG0005157 (Archaeplastida) Phylogenetic Tree(s): OG0005157_tree ,
OG_05_0006213 (LandPlants) Phylogenetic Tree(s): OG_05_0006213_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c3_23250V3.1
Cluster	HCCA: Cluster_95

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00072p00157670	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	Archaeplastida
AT5G14520	No alias	pescadillo-related	0.14	Archaeplastida
Cpa\|evm.model.tig00020961.62	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	Archaeplastida
Cre16.g683793	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	Archaeplastida
GSVIVT01032412001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	Archaeplastida
Gb_12407	No alias	component PES of ribosome PES-BOP1-WDR12 (PeBoW) complex	0.08	Archaeplastida
Mp4g12860.1	No alias	component PES of ribosome PES-BOP1-WDR12 (PeBoW) complex	0.01	Archaeplastida
Solyc07g047670.3.1	No alias	component PES of ribosome PES-BOP1-WDR12 (PeBoW) complex	0.11	Archaeplastida
Zm00001e005354_P001	No alias	no hits & (original description: none)	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
BP	GO:0042254	ribosome biogenesis	IEA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003724	RNA helicase activity	IEP	Neighborhood
MF	GO:0003849	3-deoxy-7-phosphoheptulonate synthase activity	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0008652	cellular amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009072	aromatic amino acid family metabolic process	IEP	Neighborhood
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR010613	PES	19	272
IPR001357	BRCT_dom	349	435

External Links

No external refs found!