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  5. Pp3c3_29500V3.1

Pp3c3_29500V3.1


Description : RNA-binding CRS1 / YhbY (CRM) domain protein


Gene families : OG0001381 (Archaeplastida) Phylogenetic Tree(s): OG0001381_tree ,
OG_05_0000914 (LandPlants) Phylogenetic Tree(s): OG_05_0000914_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c3_29500V3.1
Cluster HCCA: Cluster_244

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00073040 evm_27.TU.AmTr_v1... Uncharacterized CRM domain-containing protein At3g25440,... 0.03 Archaeplastida
AMTR_s00066p00206210 evm_27.TU.AmTr_v1... Uncharacterized CRM domain-containing protein At3g25440,... 0.03 Archaeplastida
AT3G27550 No alias RNA-binding CRS1 / YhbY (CRM) domain protein 0.02 Archaeplastida
AT4G13070 No alias RNA-binding CRS1 / YhbY (CRM) domain protein 0.04 Archaeplastida
Gb_39033 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.04 Archaeplastida
MA_10427237g0020 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.02 Archaeplastida
Mp2g03710.1 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.03 Archaeplastida
Solyc09g005270.3.1 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.02 Archaeplastida
Zm00001e007721_P001 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.02 Archaeplastida
Zm00001e027517_P001 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.06 Archaeplastida
Zm00001e040411_P001 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 225 309
No external refs found!