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  5. Pp3c3_3510V3.1

Pp3c3_3510V3.1


Description : No annotation


Gene families : OG0005278 (Archaeplastida) Phylogenetic Tree(s): OG0005278_tree ,
OG_05_0005424 (LandPlants) Phylogenetic Tree(s): OG_05_0005424_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c3_3510V3.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AT1G72390 No alias CONTAINS InterPro DOMAIN/s: Spt20 family... 0.08 Archaeplastida
GSVIVT01016716001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 Archaeplastida
LOC_Os01g02860.1 No alias component SPT20/ADA5 of SAGA transcription co-activator complex 0.01 Archaeplastida
LOC_Os10g25200.1 No alias component SPT20/ADA5 of SAGA transcription co-activator complex 0.05 Archaeplastida
MA_10436298g0010 No alias component SPT20/ADA5 of SAGA transcription co-activator complex 0.02 Archaeplastida
MA_10436398g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp2g19910.1 No alias component SPT20/ADA5 of SAGA transcription co-activator complex 0.03 Archaeplastida
Solyc06g063010.4.1 No alias component SPT20/ADA5 of SAGA transcription co-activator complex 0.02 Archaeplastida
Zm00001e024750_P001 No alias component SPT20/ADA5 of SAGA transcription co-activator complex 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
MF GO:0061608 nuclear import signal receptor activity IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!