AT4G35570 (HMGB5, NFD5, NFD05, HMGD)


Aliases : HMGB5, NFD5, NFD05, HMGD

Description : high mobility group B5


Gene families : OG0000591 (Archaeplastida) Phylogenetic Tree(s): OG0000591_tree ,
OG_05_0000611 (LandPlants) Phylogenetic Tree(s): OG_05_0000611_tree ,
OG_06_0002258 (SeedPlants) Phylogenetic Tree(s): OG_06_0002258_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G35570
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000663.58 No alias No description available 0.02 Archaeplastida
GSVIVT01021424001 No alias High mobility group B protein 14 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01032839001 No alias No description available 0.05 Archaeplastida
MA_72555g0010 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000785 chromatin TAS Interproscan
MF GO:0003677 DNA binding IDA Interproscan
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0003682 chromatin binding TAS Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0006333 chromatin assembly or disassembly RCA Interproscan
BP GO:0006333 chromatin assembly or disassembly TAS Interproscan
MF GO:0030527 structural constituent of chromatin TAS Interproscan
Type GO Term Name Evidence Source
CC GO:0000932 P-body IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
MF GO:0008320 protein transmembrane transporter activity IEP Neighborhood
CC GO:0009527 plastid outer membrane IEP Neighborhood
CC GO:0009707 chloroplast outer membrane IEP Neighborhood
BP GO:0010212 response to ionizing radiation IEP Neighborhood
CC GO:0010319 stromule IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0022884 macromolecule transmembrane transporter activity IEP Neighborhood
BP GO:0030865 cortical cytoskeleton organization IEP Neighborhood
BP GO:0031122 cytoplasmic microtubule organization IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0031969 chloroplast membrane IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0035770 ribonucleoprotein granule IEP Neighborhood
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP Neighborhood
CC GO:0042170 plastid membrane IEP Neighborhood
MF GO:0042887 amide transmembrane transporter activity IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043622 cortical microtubule organization IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
MF GO:1904680 peptide transmembrane transporter activity IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 34 103
No external refs found!