Aliases : HMGB5, NFD5, NFD05, HMGD
Description : high mobility group B5
Gene families : OG0000591 (Archaeplastida) Phylogenetic Tree(s): OG0000591_tree ,
OG_05_0000611 (LandPlants) Phylogenetic Tree(s): OG_05_0000611_tree ,
OG_06_0002258 (SeedPlants) Phylogenetic Tree(s): OG_06_0002258_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT4G35570 | |
Cluster | HCCA: Cluster_137 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00000663.58 | No alias | No description available | 0.02 | Archaeplastida | |
GSVIVT01021424001 | No alias | High mobility group B protein 14 OS=Arabidopsis thaliana | 0.03 | Archaeplastida | |
GSVIVT01032839001 | No alias | No description available | 0.05 | Archaeplastida | |
MA_72555g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000785 | chromatin | TAS | Interproscan |
MF | GO:0003677 | DNA binding | IDA | Interproscan |
MF | GO:0003677 | DNA binding | ISS | Interproscan |
MF | GO:0003682 | chromatin binding | TAS | Interproscan |
MF | GO:0003700 | DNA-binding transcription factor activity | ISS | Interproscan |
CC | GO:0005634 | nucleus | IDA | Interproscan |
CC | GO:0005634 | nucleus | ISM | Interproscan |
CC | GO:0005737 | cytoplasm | IDA | Interproscan |
CC | GO:0005829 | cytosol | IDA | Interproscan |
BP | GO:0006333 | chromatin assembly or disassembly | RCA | Interproscan |
BP | GO:0006333 | chromatin assembly or disassembly | TAS | Interproscan |
MF | GO:0030527 | structural constituent of chromatin | TAS | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000932 | P-body | IEP | Neighborhood |
CC | GO:0005730 | nucleolus | IEP | Neighborhood |
CC | GO:0005732 | small nucleolar ribonucleoprotein complex | IEP | Neighborhood |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
MF | GO:0008320 | protein transmembrane transporter activity | IEP | Neighborhood |
CC | GO:0009527 | plastid outer membrane | IEP | Neighborhood |
CC | GO:0009707 | chloroplast outer membrane | IEP | Neighborhood |
BP | GO:0010212 | response to ionizing radiation | IEP | Neighborhood |
CC | GO:0010319 | stromule | IEP | Neighborhood |
CC | GO:0016272 | prefoldin complex | IEP | Neighborhood |
CC | GO:0019867 | outer membrane | IEP | Neighborhood |
MF | GO:0020037 | heme binding | IEP | Neighborhood |
MF | GO:0022884 | macromolecule transmembrane transporter activity | IEP | Neighborhood |
BP | GO:0030865 | cortical cytoskeleton organization | IEP | Neighborhood |
BP | GO:0031122 | cytoplasmic microtubule organization | IEP | Neighborhood |
CC | GO:0031968 | organelle outer membrane | IEP | Neighborhood |
CC | GO:0031969 | chloroplast membrane | IEP | Neighborhood |
CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
CC | GO:0035770 | ribonucleoprotein granule | IEP | Neighborhood |
CC | GO:0036464 | cytoplasmic ribonucleoprotein granule | IEP | Neighborhood |
CC | GO:0042170 | plastid membrane | IEP | Neighborhood |
MF | GO:0042887 | amide transmembrane transporter activity | IEP | Neighborhood |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
BP | GO:0043622 | cortical microtubule organization | IEP | Neighborhood |
CC | GO:0044428 | nuclear part | IEP | Neighborhood |
MF | GO:0046906 | tetrapyrrole binding | IEP | Neighborhood |
BP | GO:0051604 | protein maturation | IEP | Neighborhood |
MF | GO:1904680 | peptide transmembrane transporter activity | IEP | Neighborhood |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR009071 | HMG_box_dom | 34 | 103 |
No external refs found! |