Pp3c4_10340V3.1

Description : TBP-associated factor 4

Gene families : OG0003546 (Archaeplastida) Phylogenetic Tree(s): OG0003546_tree ,
OG_05_0002570 (LandPlants) Phylogenetic Tree(s): OG_05_0002570_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c4_10340V3.1
Cluster	HCCA: Cluster_8

Target	Alias	Description	ECC score	Gene Family Method
AT1G27720	TAF4, TAF4B	TBP-associated factor 4B	0.03	Archaeplastida
AT5G43130	TAF4, TAF4B	TBP-associated factor 4	0.03	Archaeplastida
Gb_41115	No alias	component TAF4 of TFIId basal transcription regulation complex	0.02	Archaeplastida
LOC_Os02g43750.1	No alias	component TAF4 of TFIId basal transcription regulation complex	0.04	Archaeplastida
MA_168127g0010	No alias	component TAF4 of TFIId basal transcription regulation complex	0.02	Archaeplastida
MA_218823g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
Solyc04g078050.3.1	No alias	component TAF4 of TFIId basal transcription regulation complex	0.04	Archaeplastida
Zm00001e016812_P001	No alias	No annotation	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription factor complex	None	Extended
CC	GO:0005669	transcription factor TFIID complex	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription, initiation	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044451	nucleoplasm part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044798	nuclear transcription factor complex	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription factor complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR022003	RST	161	223
IPR007900	TAF4	787	1102

External Links

No external refs found!

Pp3c4_10340V3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation