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  5. Pp3c4_11854V3.1

Pp3c4_11854V3.1


Description : photosystem I light harvesting complex gene 5


Gene families : OG0000035 (Archaeplastida) Phylogenetic Tree(s): OG0000035_tree ,
OG_05_0009605 (LandPlants) Phylogenetic Tree(s): OG_05_0009605_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c4_11854V3.1
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00268360 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
AMTR_s00013p00180670 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
AMTR_s00022p00112770 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
AMTR_s00029p00239610 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
AMTR_s00061p00059490 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 Archaeplastida
AMTR_s00088p00153020 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
AMTR_s00099p00139960 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
AMTR_s00131p00114510 evm_27.TU.AmTr_v1... Photosystem I chlorophyll a/b-binding protein 6,... 0.02 Archaeplastida
AMTR_s00189p00032350 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
AT1G15820 CP24, LHCB6 light harvesting complex photosystem II subunit 6 0.03 Archaeplastida
AT1G19150 LHCA2*1, LHCA6 photosystem I light harvesting complex gene 6 0.05 Archaeplastida
AT1G45474 LHCA5 photosystem I light harvesting complex gene 5 0.05 Archaeplastida
AT1G61520 LHCA3 photosystem I light harvesting complex gene 3 0.03 Archaeplastida
AT3G61470 LHCA2 photosystem I light harvesting complex gene 2 0.03 Archaeplastida
AT5G01530 LHCB4.1 light harvesting complex photosystem II 0.03 Archaeplastida
AT5G28450 No alias Chlorophyll A-B binding family protein 0.02 Archaeplastida
GSVIVT01007988001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
GSVIVT01009498001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
GSVIVT01010483001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 Archaeplastida
GSVIVT01013450001 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
GSVIVT01014439001 No alias Photosynthesis.photophosphorylation.photosystem... 0.05 Archaeplastida
GSVIVT01015045001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.14 Archaeplastida
GSVIVT01016295001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
GSVIVT01019377001 No alias Photosystem I chlorophyll a/b-binding protein 3-1,... 0.03 Archaeplastida
GSVIVT01020858001 No alias Chlorophyll a-b binding protein 40, chloroplastic... 0.02 Archaeplastida
GSVIVT01021406001 No alias Chlorophyll a-b binding protein 2, chloroplastic... 0.03 Archaeplastida
GSVIVT01029789001 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Gb_10163 No alias component LHCa3 of LHC-I complex 0.03 Archaeplastida
Gb_25594 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.05 Archaeplastida
Gb_25595 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.03 Archaeplastida
Gb_32082 No alias component LHCa2 of LHC-I complex 0.04 Archaeplastida
LOC_Os02g52650.1 No alias component LHCa5 of LHC-I complex 0.04 Archaeplastida
LOC_Os06g21590.1 No alias component LHCa1 of LHC-I complex 0.02 Archaeplastida
LOC_Os07g38960.1 No alias component LHCa2 of LHC-I complex 0.03 Archaeplastida
LOC_Os09g12540.1 No alias component LHCq of LHC-II complex 0.02 Archaeplastida
LOC_Os09g17740.1 No alias component LHCb1/2/3 of LHC-II complex 0.01 Archaeplastida
LOC_Os09g26810.1 No alias component LHCa6 of LHC-I complex 0.1 Archaeplastida
MA_10431300g0020 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
MA_129206g0010 No alias component LHCb4 of LHC-II complex 0.03 Archaeplastida
MA_176279g0010 No alias component LHCb5 of LHC-II complex 0.05 Archaeplastida
MA_18273g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_815900g0010 No alias component LHCa3 of LHC-I complex 0.02 Archaeplastida
MA_97315g0010 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp1g16850.1 No alias component LHCb4 of LHC-II complex 0.03 Archaeplastida
Mp1g29620.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Mp2g15420.1 No alias component LHCa1 of LHC-I complex 0.04 Archaeplastida
Mp3g07840.1 No alias component LHCa4 of LHC-I complex 0.04 Archaeplastida
Mp4g00930.1 No alias component LHCa3 of LHC-I complex 0.05 Archaeplastida
Mp4g10900.1 No alias component LHCb5 of LHC-II complex 0.05 Archaeplastida
Mp6g01650.1 No alias component LHCb6 of LHC-II complex 0.04 Archaeplastida
Mp7g06750.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Mp7g06760.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Mp7g06770.1 No alias component LHCb1/2/3 of LHC-II complex 0.26 Archaeplastida
Mp7g06780.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Mp7g08940.1 No alias component LHCb1/2/3 of LHC-II complex 0.08 Archaeplastida
Mp7g09180.1 No alias component LHCb1/2/3 of LHC-II complex 0.08 Archaeplastida
Mp8g13180.1 No alias component LHCa2 of LHC-I complex 0.06 Archaeplastida
Pp3c10_25450V3.1 No alias photosystem I light harvesting complex gene 2 0.03 Archaeplastida
Pp3c16_16040V3.1 No alias photosystem I light harvesting complex gene 3 0.04 Archaeplastida
Pp3c3_12510V3.1 No alias photosystem I light harvesting complex gene 1 0.03 Archaeplastida
Smo104804 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Smo149722 No alias Photosynthesis.photophosphorylation.photosystem... 0.06 Archaeplastida
Smo160411 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Smo403333 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.03 Archaeplastida
Smo423144 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 Archaeplastida
Smo444370 No alias Photosynthesis.photophosphorylation.photosystem... 0.06 Archaeplastida
Solyc07g022900.4.1 No alias component LHCa5 of LHC-I complex 0.05 Archaeplastida
Solyc12g009200.2.1 No alias component LHCa6 of LHC-I complex 0.09 Archaeplastida
Solyc12g011450.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Zm00001e004129_P001 No alias component LHCa4 of LHC-I complex 0.02 Archaeplastida
Zm00001e006561_P001 No alias component LHCb6 of LHC-II complex 0.03 Archaeplastida
Zm00001e009885_P001 No alias component LHCa6 of LHC-I complex 0.1 Archaeplastida
Zm00001e010547_P001 No alias component LHCb4 of LHC-II complex 0.02 Archaeplastida
Zm00001e011045_P002 No alias component LHCb5 of LHC-II complex 0.02 Archaeplastida
Zm00001e013742_P001 No alias component LHCa1 of LHC-I complex 0.03 Archaeplastida
Zm00001e015945_P001 No alias component LHCa5 of LHC-I complex 0.1 Archaeplastida
Zm00001e021290_P001 No alias component LHCb5 of LHC-II complex 0.03 Archaeplastida
Zm00001e026547_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e032450_P001 No alias Chlorophyll a-b binding protein, chloroplastic OS=Zea... 0.02 Archaeplastida
Zm00001e034922_P001 No alias Chlorophyll a-b binding protein 1, chloroplastic OS=Zea... 0.03 Archaeplastida
Zm00001e035235_P001 No alias component LHCb4 of LHC-II complex 0.03 Archaeplastida
Zm00001e035349_P002 No alias component LHCa2 of LHC-I complex 0.04 Archaeplastida
Zm00001e041918_P001 No alias component LHCb6 of LHC-II complex 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Neighborhood
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006081 cellular aldehyde metabolic process IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006090 pyruvate metabolic process IEP Neighborhood
BP GO:0006096 glycolytic process IEP Neighborhood
BP GO:0006165 nucleoside diphosphate phosphorylation IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006733 oxidoreduction coenzyme metabolic process IEP Neighborhood
BP GO:0006757 ATP generation from ADP IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009132 nucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009166 nucleotide catabolic process IEP Neighborhood
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016052 carbohydrate catabolic process IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016832 aldehyde-lyase activity IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0016860 intramolecular oxidoreductase activity IEP Neighborhood
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP Neighborhood
BP GO:0019362 pyridine nucleotide metabolic process IEP Neighborhood
BP GO:0019363 pyridine nucleotide biosynthetic process IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0019637 organophosphate metabolic process IEP Neighborhood
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Neighborhood
BP GO:0019693 ribose phosphate metabolic process IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0042866 pyruvate biosynthetic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046031 ADP metabolic process IEP Neighborhood
BP GO:0046434 organophosphate catabolic process IEP Neighborhood
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
BP GO:0046939 nucleotide phosphorylation IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0072524 pyridine-containing compound metabolic process IEP Neighborhood
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
BP GO:1901292 nucleoside phosphate catabolic process IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 81 250
No external refs found!